Most natural language processing (NLP) tasks suffer performance degradation when encountering long complex sentences, such as semantic parsing, syntactic parsing, machine translation, and text summarization. Previous works address the issue with an intuition of decomposing complex sentences and linking simple ones, such as RST-style discourse parsing, split-and-rephrase (SPRP), text simplification (TS), simple-sentence-decomposition (SSD), etc. However, these works are not applicable for semantic parsing like abstract meaning representation (AMR) parsing and semantic dependency parsing due to misalignments to semantic relations and unavailabilities to preserve original semantics. Following the same intuition and avoiding deficiencies of previous works, we propose a novel framework, hierarchical clause annotation (HCA), based on the linguistic research of clause hierarchy. With the HCA framework, we annotate a large HCA corpus to explore the potentialities of integrating HCA structural features into semantic parsing with complex sentences. Moreover, we decompose HCA into two subtasks, i.e., clause segmentation and clause parsing, and provide neural baseline models for more silver annotations.

Cross-institutional secondary use of medical data benefits from structured semantic annotation, which, ideally, enables matching and merging semantically related data items from different sources and sites. While numerous medical terminologies and ontologies, as well as some tooling, exist to support such annotation, cross-institutional data usage based on independently annotated datasets is challenging for multiple reasons: the annotation process is resource intensive and requires a combination of medical and technical expertise since it often requires judgment calls to resolve ambiguities resulting from non-uniqueness of potential mappings to various levels of ontological hierarchies and relational and representational systems. Divergent resolution of such ambiguities can inhibit joint cross-institutional data usage based on semantic annotation since data items with related content from different sites will not be identifiable based on their respective annotations if different choices were made without further steps such as ontological inference, which is still an active area of research. We hypothesize that a collaborative approach to semantic annotation of medical data can contribute to more resource efficient and high-quality annotation by utilizing prior annotational choices of others to inform the annotation process, thus both speeding up the annotation itself and fostering a consensus approach to resolving annotational ambiguities by enabling annotators to discover and follow pre-existing annotational choices. Therefore, we have implemented a prototypical Collaborative Annotation Tool (CoAT), evaluated its usability, and present first inter-institutional experiences with this novel approach to promoting practically relevant interoperability driven by use of standardized ontologies.

Numerous image processing techniques (IPTs) have been employed to detect crack defects, offering an alternative to human-conducted onsite inspections. These IPTs manipulate images to extract defect features, particularly cracks in surfaces produced through Additive Manufacturing (AM). This article presents a vision-based approach that utilizes deep convolutional neural networks (CNNs) for crack detection in AM surfaces. Traditional image processing techniques face challenges with diverse real-world scenarios and varying crack types. To overcome these challenges, our proposed method leverages CNNs, eliminating the need for extensive feature extraction. Annotation for CNN training is facilitated by LabelImg without the requirement for additional IPTs. The trained CNN, enhanced by OpenCV preprocessing techniques, achieves an outstanding 99.54% accuracy on a dataset of 14,982 annotated images with resolutions of 1536 × 1103 pixels. Evaluation metrics exceeding 96% precision, 98% recall, and a 97% F1-score highlight the precision and effectiveness of the entire process.

Attention mechanisms have become a fundamental component of deep learning, including the field of computer vision. The key idea behind attention in computer vision is to help the model focus on the relevant spatial regions of the input image, rather than treating all regions equally. The traditional approaches to attention mechanisms in computer vision often suffer from distribution inconsistencies in the attention maps, resulting in sharp transitions that negatively affect model’s focus and lead to poor generalization on complex shapes. The problem of spatial incoherence is particularly pronounced in the task of semantic segmentation, where accurate pixel-level predictions require a detailed understanding of the spatial relationships within the image. In this paper, we propose an attention mechanism called Smooth Attention designed for convolutional neural networks to address the problem of spatial inconsistency in attention maps through multidimensional spatial smoothing. We conduct a series of experiments to evaluate the effectiveness of the proposed mechanism and demonstrate its superior performance compared to traditional methods.

Thorough and precise gene structure annotations are essential for maximizing the benefits of genomic data and unveiling valuable genetic insights. The cucumber genome was first released in 2009 and updated in 2019. To increase the accuracy of predicted gene models, 64 published RNA-seq data and 9 new strand-specific RNA-seq data from multiple tissues were used for manual comparison with the gene models. The updated annotation file (version 2.0) contains increased 24,145 predicted genes from previous version (24317 genes) with a higher BUSCO value of 96.9%. 6231 and 1490 transcripts were adjusted and newly added, respectively, accounting for 31.99% of the overall gene tally. These newly added and adjust genes were renamed (CsaV3.1_XGXXXXX), while genes remaining unaltered preserve their original des ignations. A random selection of 21 modified/added genes were validated using RT-PCR analyses. Additionally, tissue-specific patterns of gene expression were examined using newly obtained transcriptome data with the revised gene prediction model. This improved annotation of cucumber genome will provide essential and accurate resources for studies in cucumber.

Aiming at the problems of inaccurate segmentation of long object and information loss of small object in real-time semantic segmentation algorithm, this paper proposes a lightweight multi-branch real-time semantic segmentation network based on BiseNetV2. The new auxiliary branch makes full use of spatial details and context information to cover the long object in the field of view. Meanwhile, in order to ensure the inference speed of the model, the asymmetric convolution is used in each stage of the auxiliary branch to design a structure with low computational complexity. In the multi-branch fusion stage, the alignment and fusion module is designed to provide guidance information for deep and shallow feature mapping, so as to make up for the problem of feature misalignment in the fusion of information at different scales, and thus reduce the loss of small target information. In order to further improve the model’s awareness of key information, a global context module is designed to capture the most important features in the input data. The proposed network uses NVIDIA GeForce RTX 3080 Laptop GPU experiment, on the road street view data set Cityscapes and CamVid average occurring simultaneously ratio reached 77.1% and 78.4% respectively, with running speed of 127 frames/s respectively and 112 frames/s. The experimental results show that the proposed algorithm can achieve real-time segmentation and improve the accuracy significantly, showing good semantic segmentation performance

In the field of visualization, understanding users’ analytical process is important to determine the effectiveness of a designed visualization application. To understand the users’ analytical process, numerous studies have been performed to capture and analyze user interactions. Although many studies have emphasized the importance of analyzing user interactions to understand users’ analytical reasoning processes, few have successfully linked these interactions to users’ reasoning processes. This paper introduces an approach that bridges this gap by correlating semantic user interactions with analysis decisions through an interactive wire transaction analysis system and a visual state transition matrix. With the designed analysis system, interactive analysis can be performed to evaluate financial fraud in wire transactions. It also allows the mapping of captured user interactions and analytical decisions back onto the visualization, revealing users’ distinct results. The visual state transition matrix further aids to help understanding users’ analytical flows, revealing their decision-making processes. Classification machine learning algorithms are applied to assess the effectiveness of our approach in understanding analysts’ strategies by connecting them to their decisions. From the study, we observed an average of 72% accuracy in clearly classifying the semantic user interactions. For classifying individual decisions, we observed an average of 70% classification accuracy. This emphasizes the importance of capturing semantic user interactions to understand users’ analytical processes. Overall, it is determined that the proposed approach not only enhances the understanding of analytical behaviors but also offers a robust approach for evaluating user interactions in visualization tools.

Strategic intelligence covers the examination of what impacts and influences the business and the related SWOT analysis, (strengths, weaknesses, opportunities, and threats mapping). Through this research, leaders will be able to properly allocate and re-route resources, identify areas of improvement, and ensure that strategic initiatives are aligned with the organization's mission. Strategic intelligence is, therefore, effective through the use of critical thought and data-driven decisions and seeing the outcomes of different positioned alternatives. It must also form and support a culture of cooperation and open communication within the organizations, stimulating employees' inputs and learning curves. The article's subject is the necessity for strategic intelligence, a crucial competence for leaders, managers, and companies striving to remain competitive, to be utilized and best leveraged in today's volatile and dynamic business contexts. It helps the leadership turn proactive, foresee trends, and make correct, agile decisions that enforce companies' long-term growth and success. This study follows a research design that includes a thorough literature review and bibliometric research, executed via VoSViewer, illustrating the concept of strategic intelligence from a leadership point of view as a driver of competitive advantage. Further, the article points out that the limitations are acknowledged because the literature on the matter is limited, as strategic intelligence is relatively new to the business sector; moreover, more research is required to fully understand and use the potential of strategic intelligence in business growth. By overcoming these limitations and continuing to study this concept, businesses can gain a competitive edge and make informed decisions that fuel their success in an ever-evolving market. As a result, this study contributes to developing strategic intelligence in leadership and business and paves the road for further research and applications of strategic intelligence theories in organizational contexts.

Session-based recommendations which aim to predict subsequent user-item interaction based on historical user behavior during anonymous sessions can be challenging tasks. Two main challenges need to be addressed and improved: (1) How to analyze these sessions to accurately and completely capture users’ preferences, and (2) how to identify and eliminate any interference caused by noisy behavior. Existing methods have not adequately addressed these issues since they either neglected the valuable insight that can be gained from analyzing consecutive groups of items or failed to take these noisy data in sessions seriously and handled them properly, which can jointly impede recommendation systems from capturing users’ real intentions. To address these two problems, we designed a multi-order semantic denoising (MSD) model for session-based recommendations. Specifically, we grouped items of different lengths as varying multi-order semantic units to mine the user’s primary intention from multiple dimensions. Meanwhile, a novel denoising network was designed to alleviate the interference of noisy behavior and provide a more precise session representation. The result of extensive experiments on three real-world datasets demonstrated that the proposed MSD model exhibited improved performance compared with existing state-of-the-art methods in session-based recommendation.

Determining the general-name-derived semantic relationships between geographic names often requires consulting many geographic name documents for verification. In geographic name translation and geographic name knowledge graphs, this method cannot meet the needs of large-scale extraction of general-name-derived semantic relationships between geographic entities. To solve this problem, this paper proposes a general-name derivation relation recognition method based on Prompt learning and Semantic Spatiotemporal Distribution Attention Feature Fusion (SSD-AFF). This method adopts a pipe-based relationship recognition strategy. First, the Prompt learning method is adopted to form a general-name derivation pattern with the general-name-derived geographical name category and the original geographical name category as the prompt word, and then the derivation pattern is combined with the geographical name as the input of the model so that the recognition problem of the general-name derivation of the geographical name can be transformed into a classification problem using the bidirectional language model. Then, by analyzing the characteristics of the semantic association and geographical spatio-temporal distribution between the general-name-derived geographical name and the original geographical name, the semantic spatio-temporal distribution characteristics of the general-name-derived geographical name are constructed. Finally, the network model based on the semantic spatio-temporal distribution Attention Feature Fusion (SSD-AFF) is used to distinguish the general-name-derived semantic relationships. The experimental results show that the proposed method has good performance. It can effectively mine the general-name-derived semantic relations between the vector data of geographical entities and has important application value in geographical name translation and geographical name knowledge maps.

In response to the burgeoning global demand for premium agricultural products, particularly within the competitive nut market, this paper introduces an innovative methodology aimed at enhancing the grading process for almonds and their shells. Leveraging state-of-the-art Deep Convolutional Neural Networks (CNNs), specifically the AlmondNet-20 architecture, our study achieves exceptional accuracy exceeding 99%, facilitated by the utilization of a 20-layer CNN model. To bolster robustness in differentiating between almonds and shells, data augmentation techniques are employed, ensuring the reliability and accuracy of our classification system. Our model, meticulously trained over 1000 epochs, demonstrates remarkable performance, boasting an accuracy rate of 99% alongside a minimal loss function of 0.0567. Rigorous evaluation through test datasets further validates the efficacy of our approach, revealing impeccable precision, recall, and F1-score metrics for almond detection. Beyond its technical prowess, this advanced classification system offers tangible benefits to both industry experts and non-specialists alike, ensuring globally reliable almond classification. The application of deep learning algorithms, as showcased in our study, not only enhances grading accuracy but also presents opportunities for product patents, thereby contributing to the economic value of our nation. Through the adoption of cutting-edge technologies such as the AlmondNet-20 model, we pave the way for future advancements in agricultural product classification, ultimately enriching global trade and economic prosperity.

The task of weakly supervised point cloud semantic segmentation has received widespread attention and also has been widely used in autonomous driving, robotics, and modern industries. Due to the high dimensionality and large volume of point cloud data, many technical difficulties appeal to weakly supervised semantic processing, especially segmentation. However, weakly-supervised schemes usually provide only partial labelling information of the underlying point cloud data and thus need to effectively extract local features, geometric information, and contextual relationships only using these limited labelled data for supervised learning. To improve weakly-supervised semantic segmentation, we propose a novel segmentation network through the boundary-based feature aggregation based on a K-NN algorithm with down-sampling operation, and also introduce the smoothness loss and Siamese loss for effective segmentation. The experiments on public datasets demonstrate that our presented segmentation method exceeds most of the existing fully supervised and weakly-supervised methods in terms of mIoU. Specifically, our network has high segmentation accuracy on the labels of objects with similar geometrical structures, such as ceiling, wall, floor, chair and table, reaching 91.2%, 98.8%, 83.3%, 75.3% and 80.2%, respectively. Extensive experiments also illustrate its robustness, effectiveness, and generalization of the proposed weakly supervised segmentation network.

Frequently Asked Questions (FAQs) systems rely on semantic symmetry similarity measuring between two sentences. To address the challenges of insufficient training data and limited domain-specific understanding in low-resource FAQs, this paper proposes a general framework, PDAMF-FAQ, to solve these issues. Firstly, we propose a paraphrasing-based data augmentation model that integrates syntactic information and edit vectors. Using a rule-based approach, it retrieves template sentences from a corpus and masks relevant words with special characters. Edit vectors between the original and paraphrase sentences are added to a pre-trained model's encoding layer to enhance the model's ability to learn the differences between the original and reference paraphrase sentences. Additionally, this paper presents a mixed-feature semantic matching model based on SimBERT. The model extracts keyword features from the text, replacing these keywords with special characters to construct intent features. These intent features, along with the user question and keyword features, are then concatenated to form the model's input. Experiments were conducted respectively on the paraphrasing-based data augmentation model, mixed-feature semantic matching model and their comprehensive application in a low-resource domain-specific FAQ. The experimental results show that the proposed framework effectively improve the performance of domain-specific FAQ system.

With the rapid developments that have been made in computer vision and computer technology, semantic segmentation of high-resolution images has emerged as a mainstream and challenging task. The, segmentation of water areas remains a complex task due to the similar features between water areas or between water areas and other land objects. Meanwhile, since coastlines and riverbanks are typically presented in irregular shapes, it is difficult to obtain the categories of pixels at boundaries. This paper proposed the use of a Water-Land Boundary Attention Network (WLBANet) to improve the accuracy of pixels at boundaries between water and land. This network also reinforced the performance of contextual information extraction into distinguishing between water areas and other land objects. To prove the validity of this proposed network, WLBANet was performed on the Water Land Dataset (WLD), which is also by this paper, and which contains water areas and other land objects categories. The results demonstrates that the proposed method has significant effectiveness.

Snakes are a vital component of wildlife resources and are widely distributed across the globe. Bungarus multicinctus, a highly venomous snake, is found in central and southern China. B. multicinctus is a highly venomous snake and is distributed in central and southern China. Snakes are an ancient group of reptiles, and their genome resources can provide important clues for understanding the evolutionary history of reptiles. Meanwhile, genomic resources play a crucial role in comprehending the evolution of species. So far, the genomic resources of snakes are a rarity. In 2021, a snake sample was collected from Beiliu Longgukeng, Guangxi, which was identified as B. multicinctus through morphological identification. In this study, we present a highly contiguous genome of B. multicinctus with a size of 1.51 Gb. The genome contains a repeat content of 40.15%, with a total length exceeding 620 Mb. Additionally, we annotated a total of 24,869 functional genes. This research is of great significance for comprehending the evolution of B. multicinctus and provides a genomic basis for the genes involved in venom gland function.

In the era of massive construction, damaged and aging infrastructure are becoming more common. Defects, such as cracking, spalling, etc., are main types of structural damage that widely occur. Hence, ensuring the safe operation existing infrastructure through health monitoring has emerged as an important challenge facing structural engineers. In recent years, intelligent approaches, such as data driven machine and deep learning crack detection, gradually dominate over traditional methods. Among them, the semantic segmentation using deep learning models is a process of characterization of accurate location and portrait of cracks using pixel level classification. Most available studies rely on single model knowledge to perform this task. However, it is well-known that the single model might suffer from low variance and low ability to generalize in case of data alteration. By leveraging the ensemble deep learning philosophy, a novel corporative semantic segmentation of concrete cracks method called Co-CrackSegment is proposed. Firstly, five models, namely the U-net, SegNet, DeepCrack19, DeepLabV3-ResNet50, and DeepLabV3-ResNet101 are trained to serve as core models for the ensemble model Co-CrackSegment. To build the ensemble model Co-CrackSegment, a new iterative approach based on the best evaluation metrics, namely the dice score, IoU, pixel accuracy, precision, and recall metrics is developed. Results show that the Co-CrackSegment exhibits a prominent performance compared to core models and weighted average ensemble by means of the considered best statistical metrics.

There are rich proper noun derivative semantic relationships in geographic entity vector data. The identification of traditional proper noun derivative semantic relationships usually requires toponym researchers to examine the source of derived toponyms by consulting a large number of toponym documents. This method cannot adapt to the mining of proper noun derivative semantic relationships for large-scale geographical entity. In this regard, this paper proposes a method of identifying the proper noun derivative semantic relationships for geographical entity by combining prompt learning and XGBoost model. This method transforms the extraction problem of proper noun derivative semantic relationships into a binary classification problem by analyzing the characteristics of the derivation relationship of toponyms in the form of toponyms and the spatial and temporal distribution of geography. Firstly, prompt learning and gaussian mixture model are used to extract and cluster the derivation words of toponyms, so as to realize the recognition of derived toponyms collections. Then, enumerate the possible proper noun derivations in the toponym set, and then the XGBoost model is used to identify the semantic relations derived from the proper noun of geographical entities. In the experiment, the recognition method of proper noun derivative semantic relationships based on prompt learning and XGBoost proposed in this paper has achieved good relationship recognition effect in the experiment. This method has certain practical value in the fields of toponym management and toponym translation.

Transposons are mobile DNA sequences that contribute large fractions of many plant genomes. They provide exclusive resources for tracking gene and genome evolution and for developing molecular tools for basic and applied research. Despite extensive efforts, it is still challenging to accurately annotate transposons, especially for the beginners as transposon prediction requires necessary expertise in both transposon biology and bioinformatics. Moreover, the complexity of plant genomes and the dynamic evolution of transposons also bring difficulties for genome-wide transposon discovery. This review summarizes the three major strategies for transposon detections including repeat-based, structure-based, and homology-based annotation, and introduces the transposon superfamilies identified in plants thus far, and some related bioinformatics resources for detecting plant transposons. Furthermore, it describes the transposon classification and explains why the terms of ‘autonomous’ and ‘non-autonomous’ cannot be used to classify the superfamilies of transposons. Last, this review also discusses how to identify misannotated transposons and improve the quality of transposon database. This review provides helpful information about plant transposons and a beginner’s guide on annotating these repetitive sequences.

This paper presents a comparative study of fundamental similarity functions for Siamese networks in semantic textual similarity (STS) tasks. We evaluate various similarity functions using the STS Benchmark dataset, analyzing their performance and stability. Additionally, we introduce a multi-objective approach for optimal threshold selection. Our findings provide insights into the effectiveness of different similarity functions and offer a straightforward method for threshold selection optimization, contributing to the advancement of Siamese network architectures in STS applications.

This paper's aim is to extend horizons in symbolic AI. The key to doing so is to establish a scientific basis for knowledge foundations, and specifically for the concept of meaning, and its computation. This led to the creation of the Meaning Computation AI (MCAI). Knowledge structures are at the heart of MCAI. The semantic triple chain, one of such structures, is the subject of this paper. This structure is the core of introducing computational semantic reasoning models across a variety of domains. To efficiently apply knowledge structures to create semantic reasoning applications MCAI contains a development framework consisting of four components. The first component stems from our discovery that knowledge is relational in nature. It can be expressed through implicit relations (which reflect meaning) and semantic relations (which describe how implicit relations act between entities). An algebraical apparatus for relational knowledge, specifically for implicit and semantic relations, represents the first component. Axiomatic models of relational domain ontologies and domain-oriented semantic reasoning models comprise the second and third components. The fourth component contains domain-oriented semantic reasoning engines.

In this paper, a new approach to retrieve semantic images based on shape and geometric features of image in conjunction with multi-class support vector machine is proposed. Zernike moment as shape feature is to verify the invariance of objects for silhouette image. In addition, a set of geometrical features is to explore the objects shape using two features of rectangularity and circularity. Then the extracted features are normalized and employed for multi-class support vector machine either for learning or retrieving processes. The retrieving process relies on three main tasks which namely Query Engine, Matching Module and Ontology Manger, respectively. Query Engine is to build the input text or image query using SPARQL language. The matching module extracts the shape and geometric features of image’s objects and employ them to Ontology Manger which in turn inserts them in ontology knowledge base. Benchmark mammals have been conducted to empirically conclude the outcome of proposed approach. Our experiment on text and image retrieval yields efficient results to problematic phenomena than previously reported.

In recent years, ontology plays an important role in facilitating the semantic description of images which consists of describing the image by a set of words to describe the scene which signifies the belonging of the image. This description specified in several archaeological fields such as cultural, religious objects and heritage objects of France. However, the description of archaeological images is not yet exploited because this field is very diverse. In this article, we present a panel of ontology construction methods as well as archaeological ontologies. Also, we show our own OntunAr ontology to describe Tunisian archaeological images. In addition, we integrate OnTunAr into the automatic annotation of Tunisian archaeological images.

In China, 65 types of venomous snakes exist, with the Chinese Cobra Naja atra being prominent and a major cause of snakebites in humans. Furthermore, N. atra is a protected animal in some areas, as it has been listed as vulnerable by the International Union for Conservation of Nature. Recently, due to the medical value of snake venoms, venomics has experienced growing research interest. In particular, genomic resources are crucial for understanding the molecular mechanisms of venom production. Here, we report a highly continuous genome assembly of N. atra, based on a snake sample from Huangshan, Anhui, China. The size of this genome is 1.67 Gb, while its repeat content constitutes 37.8% of the genome. A total of 26,432 functional genes were annotated. This data provides an essential resource for studying venom production in N. atra. It may also provide guidance for the protection of this species.

The Oriental ratsnake Ptyas mucosa is a common non-venomous snake of the colubrid family, with a wide geographic range spanning much of South and Southeast Asia. P. mucosa is widely cultivated dut to it used in traditional medicine, scientific research, and handicrafts. Therefore, genome resources could play an important role in the efficacy of traditional medicine and the analysis of the living environment of the species. We collected a snake sample in Hezhou, Guangxi, China, which was identified as P. mucosa by morphological identification. Here we present a highly continuous P. mucosa genome with a genome size of 1.74Gb. The scaffold N50 length is 9.57Mb and the maximal length of scaffold is 78.3Mb, the P. mucosa genome has a CG content of 37.9% and the integrity of the gene reached 86.6%.Assembled using long-reads, the total length of the repeat sequence in the genome reached 735 Mb, and its repeat content was as high as 42.19%. A total of 24,869 functional genes were annotated. This study will assist in the understanding of the P. mucosa, and also provide a basis for medicinal research.

The essence of cross-modal generation and retrieval modeling for image-text interactions lies in semantic consistency. Among these, cross-modal representation alignment serves as the foundational requirement for achieving cross-modal semantic consistency. The crux of our proposed method entails the collaborative training of an image captioning model(referred to as the ’captioner’) and a pair of contrastive encoders for image-text matching(referred to as the ’concoder’). This synergistic approach yields concurrent enhancements in concoder’s performance, captioner’s proficiency, and cross-modal semantic coherence. We coin the proposed method as ‘ReCap’. To begin, we initialize the concoder through knowledge distillation from a pre-trained model. During the training process, we use the output of the initialized concoder as input to a residual attention network, jointly training it with the captioner to achieve semantic consistency. Subsequently, we iteratively update the concoder during the image-text momentum encoding phase using the residual attention network, creating a closed-loop for semantic consistency resolution. Upon completion of training, the concoder and captioner modules can be used independently to perform tasks related to cross-modal retrieval and cross-modal generation of text and images. In order to substantiate the efficacy of our proposed method, we initially conducted empirical experiments encompassing image-text retrieval and image captioning tasks, employing a widely recognized benchmark dataset, MSCOCO. Subsequently, we assessed the fine-grained cross-modal alignment performance of the concoder through an image classification task on the iNaturalist 2018 dataset. The achieved performance metrics notably surpassed those achieved by several incumbent state-of-the-art models, thus validating the proficiency of our method. Finally, motivated by the practical requirements of handling the nature conservation image data, we performed caption annotation for the iNaturalist 2018 dataset. Subsequently, we trained the ReCap on this annotated data. Experimental results demonstrate that our proposed method can maintain semantic consistency between cross-modal retrieval and image caption generation for species with similar visual features but distinct semantics. This achievement signifies a meaningful exploration in the field of cross-modal semantic consistency representation, holding significant practical value in the domain of biological research.

Semantic segmentation of high-resolution remote sensing images provides detailed and precise feature information, playing a pivotal role in decision-making and analysis in sectors such as water management, agriculture, military, and environmental protection. However, most methods merely combine features from various branches directly, without a mechanism for spatial location feature screening, and treat all extracted features as equally important. To overcome these limitations, we introduce a novel spatially adaptive interaction network (SAINet) for dynamic interaction across different features in remote sensing semantic segmentation task. Specifically, we propose a spatial refined module that leverages local context information to filter spatial locations and extract salient regions. Following this, we introduce an innovative spatial interaction module that uses a spatial adaptive modulation mechanism to dynamically select and allocate spatial position weights. This facilitates interaction between local salient areas and global information, allowing the network to focus more on relevant regions. This flexible approach enables the network to capture more informative features, thereby enhancing segmentation accuracy. Experiments conducted on the DeepGlobe, Vaihingen, and Potsdam public datasets confirm the effectiveness and capability of SAINet. Our code and models will be publicly available

Cognitive interventions vary in their level of structure, encompassing standardized and unstandardized tasks, person-centered tasks. Addressing semantic knowledge/semantic memory/semantics is important, mainly because its efficiency impacts other cognitive domains. Semantic tasks are commonly included in preventive and rehabilitation programs, typically as standardized tasks with pre-defined semantic referents. In contrast, person-centered approaches have introduced personally relevant semantics, allowing for expressive language to share thoughts and experiences. Although these approaches offer benefits beyond cognitive improvement, their lack of structure may pose challenges. Our CQ program blends structured activities with personally relevant semantics, aiming to harness the advantages of both methods. Additionally, in this review we discuss future challenges and directions in the field of semantic interventions.

With nearly 1,700 species, Microsporidia represent a group of obligate intracellular eukaryotes with veterinary, economic and medical impacts. To help in understanding the biological functions of these microorganisms, complete genome sequencing is used routinely. Nevertheless, the proper prediction of their gene catalogue is challenging due to taxon-specific evolutionary features. As innovative genome annotation strategies are needed to obtain a representative snapshot of the overall lifestyle of these parasites, the MicroAnnot tool, a dedicated workflow for microsporidian sequence annotation using data from curated databases of accurately annotated microsporidian genes, has been developed. Furthermore, specific modules have been implemented to perform small genes (< 300bp) and transposable element identification. Finally, functional annotation was performed using the signature-based InterProScan software. MicroAnnot’s accuracy has been verified by the re-annotation of four microsporidian genomes for which structural annotation had previously been validated. With its comparative approach and transcriptional signal identification method, MicroAnnot provides accurate prediction of translation initiation sites, efficient identification of transposable elements, as well as high specificity and sensitivity for microsporidian genes including those under 300 bp. Thanks to its web interface (https://microannot.org), MicroAnnot is available to the community to ensure high quality annotation of microsporidian genomes.

Phenotypical screening is a widely used approach in drug discovery for the identification of small molecules with cellular activities. However, functional annotation of identified hits often poses a challenge. The development of small molecules with narrow or exclusive target selectivity such as chemical probes and chemogenomic (CG) libraries, greatly diminishes this challenge, but non-specific effects caused by compound toxicity or interference with basic cellular functions still poses a problem to associate phenotypic readouts with molecular targets. Hence, each compound should ideally be comprehensively characterized regarding its effects on general cell functions. Here, we report an optimized live-cell multiplexed assay that classifies cells based on nuclear morphology, presenting an excellent indicator for cellular responses such as early apoptosis and necrosis. This basic readout in combination with the detection of other general cell damaging activities of small molecules such as changes in cytoskeletal morphology, cell cycle and mitochondrial health provides a comprehensive time-dependent characterization of the effect of small molecules on cellular health in a single experiment. The developed high-content assay offers multi-dimensional comprehensive characterization that can be used to delineate generic effects regarding cell functions and cell viability, allowing an assessment of compound suitability for subsequent detailed phenotypic and mechanistic studies.

Pathogenicity is unknown for the majority of human gene variants. For prioritization of sequenced somatic and germline mutation variants, in silico approaches can be utilized. In this study, 84 million non-synonymous Single Nucleotide Variants (SNVs) in the human coding genome were annotated using consensus Variant Effect Prediction (cVEP) method. An algorithm, implemented as a stacked ensemble of supervised learners, performed combination of the 39 functional, conservation mutation impact scores from dbNSFP4.0. Adding gene indispensability score, accounting for differences in the pathogenicities of the variants in the essential and the mutation-tolerant genes, improved the predictions. For each SNV the consensus combination gives either a continuous-value pathogenicity score, or a categorical score in five classes: pathogenic, likely pathogenic, uncertain significance, likely benign, benign. The provided class database is aimed for direct use in clinical practice. The trained prediction models were 5-fold cross-validated on the evidence-based categorical annotations from the ClinVar database. The rankings of the scores based on their ability to predict pathogenicity were obtained. A two-step strategy using the rankings, scores and class annotations is suggested for filtering and prioritization of the human exome mutations in clinical and biological applications of NGS technology.

The digital format opens up new possibilities for interaction with monographic publications. In particular, annotation tools make it possible to broaden the discussion on the content of a book, to suggest new ideas, to report errors or inaccuracies, and to conduct open peer reviews. However, this requires the support of the users who might not yet be familiar with the annotation of digital documents. This paper will give concrete examples and recommendations for exploiting the potential of annotation in academic research and teaching. After presenting the annotation tool of Hypothesis, the article focuses on its use in the context of HIRMEOS (High Integration of Research Monographs in the European Open Science Infrastructure), a project aimed to improve the Open Access digital monograph. The general line and the aims of a post-peer review experiment with the annotation tool, as well as its usage in didactic activities concerning monographic publications are presented and proposed as potential best practices for similar annotation activities.

Genetic testing allows for identification of germline DNA variations which are associated with a significant increase in risk of developing breast and ovarian cancer. Detection of a BRCA1 or BRCA2 pathogenic variant triggers several clinical management actions, which may include increased surveillance and prophylactic surgery for healthy carriers or treatment with PARP inhibitor therapy for carriers diagnosed with cancer. Thus, standardized validated criteria for annotation of BRCA1 and BRCA2 variants according to their pathogenicity are necessary to support clinical decision making and ensure improved outcomes. Upon detection, variants whose pathogenicity can be inferred by the genetic code are typically classified as pathogenic, likely pathogenic, likely benign, or benign. Variants whose impact on function cannot be directly inferred by the genetic code are labeled as Variants of Uncertain Clinical Significance (VUS) and are evaluated by multifactorial likelihood models that use personal and family history of cancer, segregation data, prediction tools, and co-occurrence with a pathogenic BRCA variant. Missense variants, coding alterations that replace a single amino acid residue with another, are a class of variants for which determination of clinical relevance is particularly challenging. Here, we discuss current issues in variant classification by following a typical life cycle of a BRCA1 missense variant through detection, annotation and information dissemination. Advances in massively parallel sequencing have led to a substantial increase in VUS findings. Although comprehensive assessment and classification of missense variants according to their pathogenicity remains the bottle neck, new developments in functional analysis, high throughput assays, data sharing, and statistical models are rapidly changing this scenario.

A novel method for finding linear mappings among word embeddings for several languages, taking as pivot a shared, universal embedding space, is proposed in this paper. Previous approaches learn translation matrices between two specific languages, but this method learn translation matrices between a given language and a shared, universal space. The system was first trained on bilingual, and later on multilingual corpora as well. In the first case two different training data were applied; Dinu’s English-Italian benchmark data, and English-Italian translation pairs extracted from the PanLex database. In the second case only the PanLex database was used. The system performs on English-Italian languages with the best setting significantly better than the baseline system of Mikolov et al. [1], and it provides a comparable performance with the more sophisticated systems of Faruqui and Dyer [2] and Dinu et al. [3]. Exploiting the richness of the PanLex database, the proposed method makes it possible to learn linear mappings among an arbitrary number of languages.

In recent years, semantic communication has received significant attention from both academia and industry, driven by the growing demands for ultra-low latency and high-throughput capabilities in emerging intelligent services. Nonetheless, a comprehensive and effective theoretical framework for semantic communication has yet to be established. In particular, finding the fundamental limits of semantic communication, exploring the capabilities of semantic-aware networks, or utilizing theoretical guidance for deep learning in semantic communication are very important yet still unresolved issues. In general, the mathematical theory of semantic communication and the mathematical representation of semantics are referred to as semantic information theory. In this paper, we introduce the pertinent advancements in semantic information theory. Grounded in the foundational work of Claude Shannon, we present the latest developments in semantic entropy, semantic rate-distortion, and semantic channel capacity. Additionally, we analyze some open problems in semantic information measurement and semantic coding, providing a theoretical basis for the design of a semantic communication system. Furthermore, we carefully review several mathematical theories and tools and evaluate their applicability in the context of semantic communication. Finally, we shed light on the challenges encountered in both semantic communication and semantic information theory.

This review provides an overview of advancements in plant genomics, emphasizing key stages in genomics projects and addressing associated challenges. Long read sequencing enables the cost-effective sequencing of plant DNA and assembly of highly continuous genome sequences - often even separating haplophases. Incorporating external hints, such as cDNA sequences from RNA-seq or full length cDNA sequencing, enhances the identification of gene models. While these steps enable high-throughput exploration of numerous plant genomes, a significant bottleneck lies in elucidating gene functions. The classical approach based on wet lab methods is impractical when dealing with thousands of genes in a new genome sequence. To overcome this challenge, computational tools harnessing existing information for cross species knowledge transfer are essential for expediting the functional annotation process. In support of researchers entering the field of plant genomics, a collection of recommended tools has been curated and is accessible at https://github.com/bpucker/ToolOverview.

Brown-Spotted Pit viper (Protobothrops mucrosquamatus), also known as the Chinese habu, is a widespread and highly venomous snake distributed from from northeastern India to eastern China. Genomics research can help provide much insight in understanding venom components and natural selection in vipers. Here, we collected, sequenced and assembled the genome of a male P. mucrosquamatus individual from China, producing a highly continuous reference genome, with the length of 1.53 Gb and 41.18% repeat element content. From this 24,799 genes were identified, and 97.97% genes could be annotated. Nuclear genome single-copy genes phylogenetic tree including 6 species verified the validity of our genome assembly and annotation process. This research will contribute to further study on Protobothrops biology and the genetic basis of the snake venom.

Building Information Modeling (BIM) is undeniably the most important trend in the digitization of the construction sector in recent years. BIM models currently being built are extremely geometrically rich, that is, they are modeled at a high level of detail in terms of geometry. Thanks to object-oriented programming paradigms, BIM models include high-level relationships to ensure interactions between objects, rapid view generation and documentation. However, these models are not always equally rich in non-graphical data. This is true for parameters at the library object level, with which building object models are saturated, but also at the project, site, building or floor level according to the structure of the interoperable Industry Foundation Classes (IFC) format. For this reason, experimental work was undertaken on semantic enrichment in non-graphical data of a public building (Public Kindergarten, Secemin, Poland), which has its BIM model at a high level of geometric detail but is poor in non-graphical data. As a result of the research and development work, all levels of the IFC structure were saturated with non-graphical data, validated, and the possibilities of their use were shown from the perspective of the facility manager. The article contributes to the discussion on semantic enrichment from CAD3D to BIM by presenting a detailed process for entering non-graphical data into a BIM model.

Recent advancements in deep learning have spurred the development of numerous novel semantic segmentation models for land cover mapping, showcasing exceptional performance in delineating precise boundaries and producing highly accurate land cover maps. However, to date, no systematic literature review has comprehensively examined semantic segmentation models in the context of land cover mapping. This paper addresses this gap by synthesizing recent advancements in semantic segmentation models for land cover mapping from 2017 to 2023, drawing insights on trends, data sources, model structures, and performance metrics based on a review of 106 extracted articles. Our analysis identifies top journals in the field, including MDPI Remote Sensing, IEEE Journal of Selected Topics in Earth Science, and IEEE Transactions on Geoscience and Remote Sensing, IEEE Geoscience and Remote Sensing Letters, ISPRS Journal Of Photogrammetry And Remote Sensing as the leading journals. We find that research predominantly focuses on land cover, urban areas, precision agriculture, environment, coastal areas, and forests. Geographically, 35.29% of the study areas are located in China, followed by USA (11.76%), France (5.88 %), Spain (4%) and others. Sentinel-2, Sentinel-1, and Landsat satellites emerge as the most commonly used data sources. Benchmark datasets such as ISPRS Vaihingen & Potsdam, LandCover.ai, DeepGlobe, and GID datasets are frequently employed. Model architectures predominantly utilize encoder-decoder, and hybrid convolutional neural network-based structures because of their impressive performances, with limited adoption of transformer-based architectures due to its computational complexity issue, and slow convergence speed. Lastly, this paper highlights existing key research gaps in the field to guide future research directions.

This study examines the relationship between semantic memory and social cognition in schizophrenia, addressing how these cognitive domains intersect. Semantic memory, which includes general world knowledge and word meanings, was evaluated using verbal fluency tasks and the Camels and Cactus Test. Social cognition, essential for social interaction, was assessed through emotion recognition (Faces Test) and Theory of Mind (Hinting Task). Participants included 50 individuals with schizophrenia and 30 controls. The schizophrenia group showed significantly lower performance on both semantic memory and social cognition tasks. Notably, strong correlations were found between the Camels and Cactus Test and social cognition measures, suggesting that social cognition deficits in schizophrenia may be linked to semantic memory impairments. Regression analyses highlighted that the Camels and Cactus Test significantly predicted social cognition performance, independent of symptomatology. These findings underscore the interconnectedness of semantic memory and social cognition in schizophrenia, suggesting that semantic memory deficits, particularly in non-categorical associations, play a important role in social cognitive impairments. This study provides new insights into the cognitive underpinnings of schizophrenia, emphasizing the need for further research to explore these relationships and their implications for cognitive models and therapeutic interventions.

Accurately estimating the current state of local traffic scenes is one of the key problems in the development of software components for automated vehicles. In addition to details on free space and drivability, static and dynamic traffic participants, information on the semantics may also be included in the desired representation. Multi-layer grid maps allow to include all this information in a common representation. However, most existing grid mapping approaches only process range sensor measurements such as LIDAR and Radar and solely model occupancy without semantic states. In order to add sensor redundancy and diversity it is desired to add vision based sensor setups in a common grid map representation. In this work, we present a semantic evidential grid mapping pipeline including estimates for eight semantic classes that is designed for straightforward fusion with range sensor data. Unlike in other publication our representation explicitly models uncertainties in the evdiential model. We present results of our grid mapping pipeline based on a monocular vision setup and a stereo vision setup. Our mapping resulsts are accurate and dense mapping due to the incorporation of a disparity- or depth-based ground surface estimation in the inverse perspective mapping. We conclude this paper by providing a detailed quantitative evaluation based on real traffic scenarios in the Kitti odometry benchmark and demonstrating the advantages compared to other semantic grid mapping approaches.

When discussing the concepts of risk, safety, and security, people have an intuitive understanding of what these concepts mean, and, to a certain level, this understanding is universal. However, when delving into the real meaning of these concepts, one is likely to fall into semantic debates and ontological discussions. In industrial parks, it is important that (risk) managers from dierent companies, belonging to one and the same park, have the same understanding of the concepts of risk, safety, and security. It is even important that all companies in all industrial parks share a common understanding regarding these issues. As such, this paper explores the similarities and dierences behind the perceptions of these concepts, to come to a fundamental understanding of risk, safety, and security, proposing a semantic and ontological ground for safety and security science, based on an etymological and etiological study of the concepts of risk and safety. The foundation has been induced by the semantics used in the ISO 31000 risk management guidance standard. Hence, this article proposes a coherent, standardized set of concepts and definitions with a focus on the notion “objectives” that can be used as an ontological foundation for safety and security science, linking “objectives” with the concepts of safety, security, risk, performance and also failure and success, theoretically allowing for an increasingly more precise understanding and measurement of (un)safety across the whole range of individuals, sectors and organizations, or even society as a whole.

Trimeresurus albolabris, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of T. albolabris obtained with next-generation sequencing from a specimen collected in Mengzi, Yunnan, China. After genome sequencing and assembly, the genome of this male T. albolabris individual was 1.51 Gb in length and included 38.42% repeat-element content. Using this genome, 21,695 genes were identified, and 99.17% of genes could be annotated using gene functional databases. Our genome assembly and annotation process was validated using a phylogenetic tree, which included six species and focused on single-copy genes of nuclear genomes. This research will contribute to future studies on Trimeresurus biology and the genetic basis of snake venom.

Most natural language processing (NLP) tasks operate an input sentence as a sequence with token-level embeddings and features, despite its clausal structures. Taking Abstract Meaning Representation (AMR) parsing as an example, recent parsers are empowered by Transformers and pre-trained language models, but long-distance dependencies (LDDs) introduced by long sequences are still open problems. We argue that LDDs are not superficially blamed on the sequence length but are essentially related to the internal clause hierarchy. Typically, non-verb words in a clause cannot depend on words outside, and verbs from different but related clauses have much longer dependencies than those in the same clause. With this intuition, we introduce a type of clausal feature, hierarchical clause annotation (HCA), into AMR parsing and propose two HCA-based approaches, HCA-based self-attention (HCA-SA) and HCA-based curriculum learning (HCA-CL), to integrate HCA trees of complex sentences for addressing LDDs. We conduct extensive experiments on two in-distribution (ID) AMR datasets (AMR 2.0 and AMR 3.0) and three out-of-distribution (OOD) ones (TLP, New3, and Bio). Experimental results show that our HCA-based approaches achieve significant and explainable improvements against the baseline model and outperform the state-of-the-art (SOTA) model when encountering sentences with complex clausal structures that introduce most LDD cases.

Molecular causal interactions are defined as regulatory connections between biological components. They are commonly retrieved from biological experiments, and can be used for connecting biological molecules into regulatory computational models that represent biological systems. However, including a molecular causal interaction into a model requires assessing its relevance to that model, based on detailed knowledge about the biomolecules, interaction type, and biological context. In order to standardize the representation of this knowledge in ‘causal statements’, we recently developed the MI2CAST guidelines. Here we introduce causalBuilder: an intuitive web-based curation interface for the annotation of molecular causal interactions that comply with the MI2CAST standard. The causalBuilder prototype essentially embeds the MI2CAST curation guidelines in its interface, and makes its rules easy to follow by a curator. In addition, causalBuilder serves as an original application of the VSM general-purpose curation technology, and provides both curators and tool developers with an interface that can be fully configured to allow focusing on selected MI2CAST concepts to annotate. After information is entered, the causalBuilder prototype produces genuine causal statements that can be exported in different formats.

Background: Aging impacts semantic abilities, therefore semantic exercises might be a valuable tool for cognitive stimulation in healthy older adults. However, programs in this area are limited. Methods: In the current paper, we adapted the BOX linguistic semantic program for online use via the CerUp platform. Our goal was to prepare the optimization future experience of CerUp users, including potential changes in task structure, level of difficulty and instructions, and participants’ adherence, engagement, performance accuracy, perceived difficulty, and adequacy ratings assigned to the instructions we provided that might guide future changes. Additionally, we created a map of hypothesized task-specific features that may guide tailor-made uses of the program. Results: To that end, we present preliminary results on the usability of CerUp. By analyzing task-specific usability data alongside the hypothesized map of task-specific features, we also tested the validity of the latter. Conclusions: These preliminary results on the usability of the CerUp platform highlight the potential of programs for semantic stimulation. Such findings can inform future optimizations of the program, tailored to users’ needs and effectively supporting overall language skills and general cognition.

The rapid evolution of Next Generation Sequencing in clinical settings and the resulting challenge of variants interpretation in the light of constantly updated information, requires robust data management systems and organized approaches to variant reinterpretation. In this paper, we present iVar: a freely available and highly customizable tool provided with a user-friendly web interface. It represents a platform for the unified management of variants identified by different sequencing technologies. iVar accepts, as input, VCF files and text annotation files and elaborates them, optimizing data organization and avoiding redundancies. Updated annotations can be periodically re-uploaded and associated to variants as historicize attributes. Data can be visualized through variant-centered and sample-centered interfaces. A customizable search functionality can be exploited to periodically check if pathogenicity related data of a variant are changed over time. Patient recontacting ensuing from variant reinterpretation is made easier by iVar through the effective identification of all patients present in the database and carrying a specific variant. We tested iVar by uploading 4171 VCF files and 1463 annotation files, obtaining a database of 4166 samples and 22569 unique variants. iVar has proven to be a useful tool with good performances for collecting and managing data from medium-throughput

Generic text embeddings have demonstrated considerable success across a multitude of applications. However, these embeddings are typically derived by modeling the co-occurrence patterns within text-only corpora, which can limit their ability to generalize effectively across diverse contexts. In this study, we investigate methodologies that incorporate visual information into textual representations to overcome these limitations. Through extensive ablation studies, we introduce a novel and straightforward architecture named VisualText Fusion Network (VTFN). This architecture not only surpasses existing multimodal approaches on a range of well-established benchmark datasets but also achieves state-of-the-art performance on image-related textual datasets while utilizing significantly less training data. Our findings underscore the potential of integrating visual modalities to substantially enhance the robustness and applicability of text embeddings, paving the way for more nuanced and contextually rich semantic representations.

The genus Rhodotorula includes basidiomycetous oleaginous yeast species. R. babjevae can produce compounds of biotechnological interest such as lipids, carotenoids and biosurfactants from low value substrates such as lignocellulose hydrolysate. High-quality genome assemblies are needed to develop genetic tools and to understand fungal evolution and genetics. Here, we combined short- and long-read sequencing to resolve the genomes of two R. babjevae strains, CBS 7808 (type strain) and DBVPG 8058 at chromosomal level. Both genomes have a size of 21 Mbp and a GC content of 68.2%. Allele frequency analysis indicated tetraploidy in both strains. They harbor 21 putative chromosomes with sizes ranging from 0.4 to 2.4 Mb. In both assemblies, the mitochondrial genome was recovered in a single contig, which shared 97% pairwise identity. The pairwise identity between the majority of chromosomes ranges from 82% to 87%. We found indications for strain-specific extrachromosomal endogenous DNA. 7,591 protein-coding genes and 7,607 associated transcripts were annotated in CBS 7808 and 7,481 protein-coding genes and 7,516 associated transcripts in DBVPG 8058. CBS 7808 has accumulated a higher number of tandem duplications than DBVPG 8058. We identified large translocation events between putative chromosomes and a high genetic divergence between the two strains.

Next-generation sequencing is now a mature technology, allowing partial animal genomes to be produced for many clades. Though many software exist for genome assembly and annotation, a simple pipeline that allows researchers to input raw sequencing reads in fastq format and allow the retrieval of a completely assembled and annotated mitochondrial genome is still missing. mitoMaker 1.0 is a pipeline developed in python that implements (i) recursive de novo assembly of mitochondrial genomes using a set of increasing k-mers; (ii) search for the best matching result to a target mitogenome and; (iii) performs iterative reference-based strategies to optimize the assembly. After (iv) checking for circularization and (v) positioning tRNA-Phe at the beginning, (vi) geneChecker.py module performs a complete annotation of the mitochondrial genome and provides a GenBank formatted file as output.

Nowadays, semantic segmentation is increasingly used in exploration by underwater robots, for example in autonomous navigation, so that the robot can recognise the nature and elements of its environment during the mission and act according to this classification to avoid collisions. Other applications can be found in the search for archaeological artefacts, in the inspection of underwater structures or in species monitoring. Therefore, it is necessary to try to improve the performance in these tasks as much as possible. To this end, we compare some methods for improving image quality and for data augmentation and test whether higher performance metrics can be achieved with both strategies. The experiments are performed with the SegNet implementations and the SUIM dataset with 8 common underwater classes to compare the obtained results with the already known ones. The results obtained with both strategies show that they are beneficial and lead to better performance results by achieving a mean IoU of 56% and an increased overall accuracy of 81.8%. The single result shows that there are 5 classes with an IoU value above 60% and only one class with an IoU value below 30%, which is a more reliable result and easier to use in real contexts.

Land cover mapping, essential for understanding global land use patterns, relies on satellite imagery for monitoring changes, assessing ecosystem health, and supporting conservation ef- forts. However, significant challenges remain in managing large, complex satellite imagery datasets, acquiring specialized datasets due to high costs and labor intensity, and a lack of comparative studies for optimal deep learning model selection. Additionally, a scarcity of aerial datasets specifically tailored for agricultural areas exists. This study addresses these gaps by presenting a method for semantic segmentations of land covers in agricultural areas using satellite images and deep learning models with pre-trained backbones. We introduce an efficient methodology for preparing semantic segmentation datasets and contribute the "Land Cover Aerial Imagery" (LICAID) dataset for semantic segmentation. The study focuses on the Franciacorta area, Lombardy Region, leveraging the rich diversity of the dataset to effectively train and evaluate the models. We conduct a comparative study, employing cutting-edge deep learning-based segmentation models (U-Net, SegNet, DeepLabV3) with various pre-trained backbones (ResNet, Inception, DenseNet, EfficientNet) on our dataset acquired from Google Earth Pro. Through meticulous data acquisition, preprocessing, model selection, and evaluation, we demonstrate the effectiveness of these techniques in accurately delineating land cover classes. Integrating pre-trained feature extraction networks significantly improves performance across various metrics. Additionally, addressing challenges such as data availability, computational resources, and model interpret-ability is essential for advancing the field of remote sensing and supporting sustainable environmental stewardship worldwide.

Nowadays, one of the greatest challenges in Data Meshes revolves around detecting and creating Data Domains and Data Products for providing the ability to adapt easily and quickly to changing business needs. This requires a disciplined approach to identify, differentiate and prioritize distinct data sources according to their content and diversity. The current paper tackles this highly com-plicated issue and suggests a standardized approach that integrates the concept of Data Blueprints with Data Meshes. In essence, a novel standardization framework is proposed that creates Data Products using a metadata semantic enrichment mechanism, the latter also offering Data Domain readiness and alignment. The approach is demonstrated using real-world data produced by mul-tiple sources in a poultry meat production factory. A set of functional attributes is used to compare qualitatively the proposed approach against existing data structures utilized in storage architectures with quite promising results. Finally, experimentation with different scenarios varying in data product complexity and granularity suggests successful performance.

Interhemispheric and frontoparietal functional connectivity have been reported to increase during explicit information processing. However, it is unclear how and when interhemispheric and frontoparietal functional connectivity interact during explicit semantic processing. Here, we tested the neural coupling hypothesis that explicit semantic processing promotes neural activity in the nondominant right hemispheric areas owing to synchronization with enhanced frontoparietal functional connectivity at later processing stages. We analyzed electroencephalogram data obtained using a semantic priming paradigm, which comprised visual priming and target words successively presented under direct or indirect attention to semantic association. Scalp potential analysis demonstrated that the explicit processing of congruent targets reduced negative event-related potentials, as previously reported. Current source density analysis showed that explicit semantic processing activated the right temporal area during later temporal intervals. Subsequent dynamic functional connectivity and neural coupling analyses revealed that explicit semantic processing increased the correlation between right temporal source activities and frontoparietal functional connectivity in later temporal intervals. These findings indicate that explicit semantic processing increases neural coupling between the interhemispheric and frontoparietal functional connectivity during later processing stages.

Lung cancer is a deadly disease if not diagnosed in its early stages. However, early detection of lung cancer is a challenging task due to the shape and size of its nodules. Radiologists need support from automated tools for precise opinion. Automated detection of the affected lungs nodule is difficult because of the shape similarity among healthy tissues. Over the years, several expert systems have been developed that help radiologists to diagnose lung cancer. In this article, we propose a framework to precisely detect lungs cancer by classifying it between benign and malignant nodules. The framework is tested using the subset of the publicly available at the Lung Image Database Consortium image collection (LIDC-IDRI). Multiple techniques including filtering and noise removing are applied for pre-processing. Subsequently, the OTSU and the semantic segmentation are used to accurately detect the unhealthy lungs nodules. In total, 13 nodules features were extracted using Principal Components Analysis (PCA) algorithm. Four optimal features are selected based on the classification performance. In the classification phase, 9 different classifiers are used along with two types of validation schemes i.e. train test holdout validation with 70-30 data split and 10 fold cross-validation. Our experiments show that the proposed system provides 99.23\% accuracy using logic boost classifier.

When analyzing user geospatial information through deep learning methods, it is typically necessary to annotate existing geospatial data. Currently, manual annotation methods are commonly employed, suffering from issues related to low efficiency and accuracy. This design is based on the TensorFlow deep learning framework and first realizes the BiLSTM+CRF+AGG deep learning model. Among the models, AGG is the aggregation layer, which is introduced to solve the problem of solid particle size equilibrium. Secondly, based on the characteristics of original data and professional data, an automatic labeling algorithm is proposed. The algorithm first preprocesses the acquired original data set and professional data set, The most valuable unlabeled data set which can make the training model converge quickly is selected from the original data set as the target data set. Sort the target data set based on preset rules and set annotation parameters for the sorted target data set. Based on the set annotation parameters, the corpus is synthesized and used as the annotation result. Thirdly, based on the active learning strategy, a manual annotation auxiliary scheme is proposed, and an Excel generation module that is convenient for manual annotation correction is designed and developed to further improve the efficiency and quality of annotation through iterative processing. The combination of the BiLSTM+CRF+AGG deep learning model and high-quality annotation can accurately identify non-standard, incomplete, or even incorrect geographical information entities. This annotation method has found successful practical application within the context of the research project and has been granted an invention patent.

Background: Transposable elements (TEs) constitute the vast majority of all eukaryotic DNA, and display extreme diversity, with thousands of families. Given their abundance and diversity, TEs discovery and annotation becomes challengeable. At present, tools and databases have built libraries to mask TEs in genomes based on de novo- and homology-based identification strategies, but no consensus criteria about which tools should be used have been proposed. Results: In the de novo-based strategy, we compared performances of TE libraries developed by four commonly used tools, including RepeatModeler, LTR_FINDER, LTRharvest, and MITE_Hunter, by using a simulated genome as a standard control. The results showed that the performance of RepeatModeler decreased as it was combined with either LTR_FINDER or LTRharvest. Combination of RepeatModeler and MITE_Hunter showed better performance than RepeatModeler and MITE_Hunter alone. In the homology-based strategy, we evaluated different sources from a taxonomic point of view to build an accurate TE library. When we selected a library from databases to identify TEs for Arabidopsis thaliana genome, the library from a genus genetically closer to Arabidopsis achieved better performance than other genera with further genetic distance. Without the Arabidopsis, combination of top three genera closer to Arabidopsis showed better performance than combination of all genera. Conclusion: This study proposes a series of recommendations to perform an accurate TE annotation: 1) For de novo-based strategy, RepeatModeler and MITE_Hunter are suggested to build a TE library; 2) For homology-based strategy, it is recommended to use library of genus genetically close to the species rather than use combined library from all genera.

The Semantic-Enhanced Tree-LSTM (SeT-LSTM) network, a novel advancement in the realm of linguistic modeling, marks a significant step forward from traditional Tree-based Long Short Term Memory (LSTM) networks. By intricately weaving in the nuances of typed grammatical dependencies, SeT-LSTMs offer a more nuanced understanding of language semantics. Traditional models often overlook the semantic shift caused by variations in word or phrase roles, a gap this paper aims to fill by focusing on the types of grammatical connections, or typed dependencies, within sentences. Our proposed architecture, dubbed the Semantic Relationship-Guided LSTM (SRG-LSTM), leverages a control mechanism to model the interplay between sequence elements. Additionally, we present a novel Tree-LSTM variant, the Semantic Dependency Tree-LSTM (SDT-LSTM), which integrates dependency parse structures with dependency types for more robust sentence embedding. The SDT-LSTM demonstrates superior performance in Semantic Relatedness Scoring and Sentiment Analysis compared to its predecessors. Qualitatively, it shows resilience to changes in sentence voice and heightened sensitivity to nominal alterations, aligning well with human intuition. This research underlines the pivotal role of grammatical relationships in sentence understanding and paves the way for further exploration in this domain.

As we all know, many more dynamic objects appear almost continuously in real world, which are immensely able to impair the performance of the majority of vision-based SLAM systems that are based on the static-world assumption. In order to improve the robustness and accuracy of visual SLAM in the high dynamic environment, a real-time and robust stereo SLAM system for dynamic scenes was proposed. To weaken influences of dynamic content, the moving object detection method was put forward in our visual odometry, then the semantic segmentation network was combined into our stereo SLAM to extract pixel-level contours of dynamic objects. Then influences of dynamic objects were extremely weaken and the performance of our system was increased markedly in dynamic, complex and crowed city spaces. Experiment with both on KITTI Odometry dataset and in a real-life scene, the results show that our method can dramatically decrease the tracking error or drift, improve the robustness and stability of our stereo SLAM in high dynamic outdoor scenarios.

Embedding representation models characterize each word as a vector of numbers with a fixed length. These models have been used in tasks involving text classification, such as recommen- dation and question-answer systems. Semantic relationships are words with a relationship between them providing a complete idea to a text. Therefore, it is hypothesized that an embedding model involving semantic relationships will provide better performance for tasks that use them. This paper presents three embedding models based on semantic relations extracted fromWikipedia to classify texts. The synonym, hyponym, and hyperonym semantic relationships were the ones considered in this work since previous experiments have shown that they are the ones that provide the most semantic knowledge. Lexical-syntactic patterns present in the literature were implemented and subsequently applied to the Wikipedia corpus to obtain the semantic relationships present in it. Several semantic relationships are used in different models: synonymy, hyponym-hyperonym, and a combination of the first two. A convolutional neural network was trained for text classification to evaluate the performance of each model. The results obtained were evaluated with the metrics of precision, accuracy, recall, and F1-measure. The best values obtained with the second model were accuracy of 0.79 for the 20-Newsgroup corpus. F1-measure and recall of 0.87 respectively for the Reuters corpus.

The paper describes model of human affect based on quantum theory of semantics. The model considers emotion as subjective representation of behavioral context relative to a basis binary choice, organized by cyclical process structure and an orthogonal evaluation axis. The resulting spherical space, generalizing well-known circumplex models, accommodates basic emotions in specific angular domains. Predicted process-semantic structure of affect is observed in the word2vec data, as well as in the previously obtained spaces of emotion concepts. The established quantum-theoretic structure of affective space connects emotion science with quantum models of cognition and behavior, opening perspective for synergetic progress in these fields.

The paper describes an algorithm for semantic representation of behavioral contexts relative to a dichotomic decision alternative. The contexts are represented as quantum qubit states in two-dimensional Hilbert space visualized as points on the Bloch sphere. The azimuthal coordinate of this sphere functions as a one-dimensional semantic space in which the contexts are accommodated according to their subjective relevance to the considered uncertainty. The contexts are processed in triples defined by knowledge of a subject about a binary situational factor. The obtained triads of context representations function as stable cognitive structure at the same time allowing a subject to model probabilistically-variative behavior. The developed algorithm illustrates an approach for quantitative subjectively-semantic modeling of behavior based on conceptual and mathematical apparatus of quantum theory.

As the amount of sensor data made available online increases, it becomes more difficult for users to identify useful datasets. Semantic web technologies improve discovery with meaningful ontologies, but the decision of suitability remains with the users. The GEO label provides a visual summary of the standardised metadata to aid users in this process. This work presents novel rules for deriving the information for the GEO label's multiple facets, such as user feedback or quality information, based on the Semantic Sensor Network Ontology and related ontologies. It enhances an existing implementation of the GEO label API to generate labels for resources of the Semantic Sensor Web. The prototype is deployed to serverless cloud infrastructures. We find that serverless GEO label generation is capable of handling two evaluation scenarios for concurrent users and burst generation. More real-world semantic sensor descriptions and an integration into large scale discovery platforms are needed to develop the presented solutions further.

Clinically, knowing the number of red blood cells (RBCs) and white blood cells (WBCs) helps doctors to make the better decision on accurate diagnosis of numerous diseases. The manual cell counting is a very time-consuming and expensive process, and it depends on the experience of specialists. Therefore, a completely automatic method supporting cell counting is a viable solution for clinical laboratories. This paper proposes a novel blood cell counting procedure to address this challenge. The proposed method adopts SegNet - a deep learning semantic segmentation to simultaneously segment RBCs and WBCs. The global accuracy of the segmentation of WBCs, RBCs, and the background of peripheral blood smear images obtains 89% when segment WBCs and RBCs from the background of blood smear images. Moreover, an effective solution to separate grouped or overlapping cells and cell count is presented using Euclidean distance transform, local maxima, and connected component labeling. The counting result of the proposed procedure achieves an accuracy of 93.3% for red blood cell count using dataset 1 and 97.38% for white blood cell count using dataset 2.

Fast 3D reconstruction with semantic information on road scenes is of great requirements for autonomous navigation. It involves issues of geometry and appearance in the field of computer vision. In this work, we propose a method of fast 3D semantic mapping based on the monocular vision. At present, due to the inexpensive price and easy installation, monocular cameras are widely equipped on recent vehicles for the advanced driver assistance and it is possible to acquire semantic information and 3D map. The monocular visual sequence is used to estimate the camera pose, calculate the depth, predict the semantic segmentation, and finally realize the 3D semantic mapping by combination of the techniques of localization, mapping and scene parsing. Our method recovers the 3D semantic mapping by incrementally transferring 2D semantic information to 3D point cloud. And a global optimization is explored to improve the accuracy of the semantic mapping in light of the spatial consistency. In our framework, there is no need to make semantic inference on each frame of the sequence, since the mesh data with semantic information is corresponding to sparse reference frames. It saves amounts of the computational cost and allows our mapping system to perform online. We evaluate the system on naturalistic road scenes, e.g., KITTI and observe a significant speed-up in the inference stage by labeling on the mesh.

Machine reading comprehension is a crucial area of research in natural language processing, aiming to enable machines to read and understand text as humans do, and to answer questions related to the text content. The pre-trained language model, represented by BERT, has achieved superior results compared to traditional models in many NLP tasks, leading to the rise of the pre-trained paradigm in the field of natural language processing. This paper addresses the issue that the pre-trained language model lacks the ability to extract long-distance semantic relations and make efficient use of linguistic features. Firstly, the recent developments of the pre-trained language model are described. Then, two feature maps are used to intuitively express the structured long-distance semantic correlation features, and the traditional sequence structure features are integrated. The influence of different feature map construction methods on machine reading comprehension is compared. Finally, the application of the pre-trained language model in machine reading comprehension is summarized and prospected. By fusing graph structure features, the model can learn more abundant language knowledge, thus further improving its reasoning ability.

A new requirement for the manufacturing companies in Industry 4.0 is to be flexible with respect to changes in demands, requiring them to react rapidly and efficiently on the production capacities. Together with the trend to use Service-Oriented Architectures (SOA), this requirement induces a need for agile collaboration among supply chain partners, but also between different divisions or branches of the same company. In order to address this collaboration challenge, we~propose a novel pragmatic approach for the process analysis, implementation and execution. This~is achieved through sets of semantic annotations of business process models encoded into BPMN 2.0 extensions. Building blocks for such manufacturing processes are the individual available services, which are also semantically annotated according to the Everything-as-a-Service (XaaS) principles and stored into a common marketplace. The optimization of such manufacturing processes combines pattern-based semantic composition of services with their non-functional aspects. This is achieved by means of Quality-of-Service (QoS)-based Constraint Optimization Problem (COP) solving, resulting in an automatic implementation of service-based manufacturing processes. The produced solution is mapped back to the BPMN 2.0 standard formalism by means of the introduced extension elements, fully detailing the enactable optimal process service plan produced. This approach allows enacting a process instance, using just-in-time service leasing, allocation of resources and dynamic replanning in the case of failures. This proposition provides the best compromise between external visibility, control and flexibility. In this way, it provides an optimal approach for business process models' implementation, with a full service-oriented taste, by implementing user-defined QoS metrics, just-in-time execution and basic dynamic repairing capabilities. This paper presents the described approach and the technical architecture and depicts one initial industrial application in the manufacturing domain of aluminum forging for bicycle hull body forming, where the advantages stemming from the main capabilities of this approach are sketched.

Recent advancements in semantic communication (SC) have shown the potential to surpass the limitations of the Shannon theorem, by leveraging an understanding of the meaning of data instead of the data itself. In networks, data-aided sensing (DAS) presents a powerful tool that can significantly reduce communication overhead, aligning perfectly with the goals of SC by providing more powerful semantic messages. This survey explores the synergy between DAS and SC and investigates how their convergence can lead to more efficient and effective communication.

This paper proposes a solution for the problem of mobile robot navigation and trajectory interpolation in dynamic environments with large scenes. The solution combines a semantic laser SLAM system that utilizes deep learning and a trajectory interpolation algorithm. The paper first introduces some open-source laser SLAM algorithms and then elaborates in detail on the general framework of the SLAM system used in this paper. Secondly, the concept of voxel is introduced into the occupation probability map to enhance the ability of local voxel maps to represent dynamic objects. Then, in this paper, we propose a PointNet++ point cloud semantic segmentation network combined with deep learning algorithms to extract deep features of dynamic point clouds in large scenes and output semantic information of points on static objects. A descriptor of the global environment is generated based on its semantic information. Closed-loop completion of global map optimization is performed to reduce cumulative error. Finally, T-trajectory interpolation is utilized to ensure the motion performance of the robot and improve the smooth stability of the robot trajectory. The experimental results indicate that the combination of the semantic laser SLAM system with deep learning and the trajectory interpolation algorithm proposed in this paper yields better graph building and loop closure effects in large scenes at SIASUN large scene campus. The use of T-trajectory interpolation ensures vibration-free and stable transitions between target points.

Symbolic semantic understanding of staff images is an important part in music information retrieval. Due to the complex composition of staff symbols and the strong semantic correlation between symbol spaces, it is difficult to understand the pitch and duration of each note during performances. In this paper, we design a semantic understanding system for optical staff symbols. The system uses the YOLOv5 to implement optical staff’s low-level semantic understanding stage, which understands the pitch and duration in natural scales and other symbols that affect the pitch and duration. The proposed note encoding reconstruction algorithm is used to implement high-level semantic understanding stage. Such algorithm understands the logical, spatial, and temporal relationships between natural scales and other symbols based on music theory, and outputs digital codes for the pitch and duration of main notes during performances. The model is trained with a self-constructed SUSN dataset. Experimental results of YOLOv5 show that the precision is 0.989 and the recall is 0.972. For the system, the error rate is 0.031 and the omission rate is 0.021. The paper concludes by analysing the causes of semantic understanding errors and offers recommendations for further research. The results of this paper provide a method for multimodal music artificial intelligence applications such as notation recognition through listening, intelligent score flipping and automatic performance.

Semantic segmentation is a very popular topic in modern computer vision and it has applications to many fields. Researchers proposed a variety of architectures over time, but the most common ones exploit an encoder-decoder structure that aims to capture the semantics of the image and it low level features. The encoder uses convolutional layers, in general with a stride larger than one, to extract the features, while the decoder recreates the image by upsampling an using skip connections with the first layers. In this work, we use DeepLab as architecture to test the effectiveness of creating an ensemble of networks by randomly changing the activation functions inside the network multiple times. We also use different backbone networks in our DeepLab to validate our findings. We manage to reach a dice coefficient of 0.888, and a mean Intersection over Union (mIoU) of 0.825, in the competitive Kvasir-SEG dataset. Results in skin detection also confirm the performance of the proposed ensemble, which is ranked first with respect to other state-of-the-art approaches (including HardNet) in a large set of testing datasets. The developed code will be available at https://github.com/LorisNanni.

A statistical analysis of semantic memory should reflect the complex, multifactorial structure of the relations among its items. Still, a dominant paradigm in the study of semantic memory has been the idea that the mental representation of concepts is structured along a simple branching tree spanned by superordinate and subordinate categories. We propose a generative model of item representation with correlations that overcomes the limitations of a tree structure. The items are generated through "factors" that represent semantic features or real-world attributes. The correlation between items has its source in the extent to which items share such factors and the strength of such factors: if many factors are balanced, correlations are overall low; whereas if a few factors dominate, they become strong. Our model allows for correlations that are neither trivial nor hierarchical, but may reproduce the general spectrum of correlations present in a data-set of nouns. We provide an estimate of the number of concepts that can be stored and retrieved by a large-scale cortical network, the Potts network, which is perhaps approximately 10⁷ with human cortical parameters. When this storage capacity is exceeded, however, retrieval fails completely only for balanced factors; above a critical degree of imbalance, a phase transition leads to a regime where the network still extracts considerable information about the cued item, even if not recovering its detailed representation: partial categorization seems to emerge spontaneously as a consequence of the dominance of particular factors, rather than being imposed ad hoc. We argue this to be a relevant model of semantic memory resilience in Tulving’s remember/know paradigms.

Text annotation is an essential element of the natural language processing approaches. The manual annotation process performed by humans has several drawbacks, such as subjectivity, slowness, fatigue, and possibly carelessness. In addition, annotators may annotate ambiguous data. So, we developed the concept of automated annotation to get the best annotations using several machine-learning approaches. The proposed approach is based on an ensemble algorithm of meta-learners and meta-vectorizer techniques. The approach employs a semi-supervised learning technique for automated annotation, aimed at detecting hate speech. This involves leveraging various machine learning algorithms, including Support Vector Machine (SVM), Decision Tree (DT), K-Nearest Neighbors (KNN), and Naive Bayes (NB), in conjunction with Word2Vec and TF-IDF text extraction methods. The annotation process is performed using 13,169 Indonesian YouTube comments data. The proposed model used a Stemming approach using data from Sastrawi and also new data of 2,245 words. Semi-supervised learning uses 5%, 10%, and 20% of labeled data as compared to performing labeling based on 80% of the datasets. In semi-supervised learning, the model learns from the labeled data, which provides explicit information, and the unlabeled data, which offers implicit insights. This hybrid approach enables the model to generalize and make informed predictions even when limited labeled data is available, ultimately enhancing its ability to handle real-world scenarios with scarce annotated information. In addition, the proposed method uses a variety of thresholds for matching words labeled with hate speech ranging from 0.6, 0.7, 0.8, and 0.9. The experiment showed that the KNN-Word2ec model has the best accuracy value of 96.9% with a scenario of 5%:80%:0.9. However, several other methods have also accuracy above 90%, such as SVM and DT based on both text extraction methods in several test scenarios.

The study of the currently known >3,000 species of snakes can provide valuable insights into the evolution of their genomes. Deinagkistrodon acutus, also known as Sharp-nosed Pit Viper, one hundred-pacer viper or five-pacer viper, is a venomous snake with significant economic, medicinal and scientific importance. Widely distributed in southeastern China and South-East Asia, D. acutus has been primarily studied for its venom. Here, we employed next-generation sequencing to assemble and annotate a highly continuous genome of D. acutus. The genome size is 1.46 Gb; its scaffold N50 length is 6.21 Mb, the repeat content is 42.81%, and 24,402 functional genes were annotated. This study helps to further understand and utilize D. acutus and its venom at the genetic level.

Leishmania major is the main causative agent of cutaneous leishmaniasis in humans. The Friedlin strain of this species (LmjF) was chosen when a multi-laboratory consortium undertook the objective of deciphering the first genome sequence for a parasite of the genus Leishmania. The objective was successfully attained in 2005, and this represented a milestone for Leishmania molecular biology studies around the world. Although the LmjF genome sequence was done following a shotgun strategy and using classical Sanger sequencing, the results were excellent and this genome assembly served as the reference for subsequent genome assemblies in other Leishmania species. Here, we present a new assembly for the genome of this strain (named LMJFC for clarity), generated by the combination of two high throughput sequencing platforms, Illumina short-read sequencing and PacBio Single Molecular Real-Time (SMRT) sequencing, which provides long-read sequences. Apart from resolving uncertain nucleotide positions, several genomic regions have been reorganized and a more precise composition of tandemly repeated gene loci was attained. Additionally, the genome annotation has been improved by adding 542 genes and more accurate coding-sequences defined for around two hundred genes, based on the transcriptome delimitation also carried out in this work. As a result, we are providing gene models (including untranslated regions and introns) for 11,238 genes. Genomic information ultimately determines the biology of every organism; therefore, our understanding of molecular mechanisms will depend on the availability of precise genome sequences and accurate gene annotations. In this regards, this work is providing an improved genome sequence and updated transcriptome annotations for the reference L. major Friedlin strain.

Aiming at the problem that dynamic targets in indoor environments lead to low accuracy and large errors in the localization and position estimation of visual SLAM systems and the inability to build maps containing semantic information, a semantic visual SLAM algorithm based on the semantic segmentation network DeepLabV3+ and LK optical flow is proposed based on ORB-SLAM2 system. First, the dynamic target feature points are detected and rejected based on the lightweight semantic segmentation network DeepLabV3+ and LK optical flow method. second, the static environment occluded by the dynamic target is repaired using the time-weighted multi-frame fusion background repair technique. Lastly, the filtered static feature points are used for feature matching and position calculation. Meanwhile, the semantic labeling information of static objects obtained based on the lightweight semantic segmentation network DeepLabV3+ is fused with the static environment information after background repair to generate dense point cloud maps containing semantic information, and the semantic dense point cloud maps are transformed into semantic octree maps using the octree spatial segmentation data structure. The localization accuracy of the visual SLAM system and the construction of the semantic maps are verified using the TUM RGB-D widely used dataset and real scene data, respectively. The experimental results show that the proposed semantic visual SLAM algorithm can effectively reduce the influence of dynamic targets on the system, has a higher localization accuracy, and compared with other advanced algorithms, such as DynaSLAM, has the highest performance in indoor dynamic environments while considering both localization accuracy and real-time performance. In addition, semantic maps can be constructed so that the robot can better understand and adapt to the indoor dynamic environment.

Probabilistic latent semantic analysis is a statistical technique developed for information retrieval and spanned many fields. It yields intuitive and solid results. However, the rigidity of the assumptions and the iterative nature derived from the Expectation-maximization algorithm generate several problems, dividing detractors and enthusiasts. In this manuscript, we first describe the Probabilistic latent semantic analysis. After, we discuss reformulations that attempt to solve these problems. We pay special attention to the works relating Probabilistic latent semantic analysis and the Singular value decomposition Theorem. Also, Probabilistic latent semantic analysis can be the basis for other techniques, such as kernelization or probabilistic transfer learning, and those that extend the descriptive character of the Principal component analysis to an inferential tool and open a window of opportunities.

This study describes the development of an image-based insect trap diverging from the plug-in camera insect trap paradigm. In short, a) it does not require manual annotation of images to learn how to count targeted pests and, b) it self-disposes the captured insects, and therefore is suitable for long-term deployment. The device consists of an imaging sensor integrated with Raspberry Pi microcontroller units with embedded deep learning algorithms that count agricultural pests inside a pheromone-based funnel trap. The device also receives commands from the server which configures its operation while an embedded servomotor can automatically rotate the detached bottom of the bucket to dispose of hydrated insects as they begin to pile up. Therefore, it completely overcomes a major limitation of camera-based insect traps: the inevitable overlap and occlusion caused by the decay and layering of insects during long-term operation, thus extending the autonomous operational capability. We study cases that are underrepresented in literature such as counting in situations of congestion and significant debris using crowd counting algorithms encountered in human surveillance. Finally, we perform comparative analysis of the results from different deep-learning approaches (YOLO7/8, crowd counting, deep learning regression) and we open-source the code and a large database of Lepidopteran plant pests.

This study used established biomarkers of death due to ischemic stroke (IS) and performed network, enrichment, and annotation analysis. Protein-protein interaction (PPI) network analysis revealed that the backbone of the highly connective network of IS death consisted of IL6, ALB, TNF, SERPINE1, VWF, VCAM1, TGFB1, and SELE. Cluster analysis revealed immune and hemostasis subnetworks, which were strongly interconnected through the major switches ALB and VWF. Enrichment analysis revealed that the PPI immune subnetwork of death due to IS was highly associated with TLR2/4, TNF, JAK-STAT, NOD, IL10, IL13, IL4, and TGF-β1/SMAD pathways. The top biological and molecular functions and pathways enriched in the hemostasis network of death due IS were platelet degranulation and activation, the intrinsic pathway of fibrin clot formation, the urokinase-type plasminogen activator pathway, post-translational protein phosphorylation, integrin cell surface interactions, and the proteoglycan-integrin-extra cellular matrix complex (ECM). Regulation Explorer analysis of transcriptional factors shows: a) that NFKB1, RELA and SP1 were the major regulating actors of the PPI network; and b) hsa-mir-26-5p and hsa-16-5p were the major regulating microRNA actors. In conclusion, prevention of death due to IS should consider that current IS treatments may be improved by targeting VWF, VEGFA, proteoglycan-integrin-ECM complex, NFKB/RELA and SP1.

Over the past decade, Knowledge bases (KB) have been increasingly utilized to complete and enrich the representation of queries and documents in order to improve the document retrieval task. Although many approaches have used KB for such purpose, understanding how effectively lev-erage entity-based representation still needs to be resolved. This paper proposes a Purely Enti-ty-based Semantic Search Approach for Information Retrieval (PESS4IR) as a novel solution. The approach includes (i) its own entity linking method, (ii) an inverted indexing method, and for document retrieval and ranking, (iii) an appropriate ranking method is designed to take advantage of all the strengths of the approach. We report the findings on the performance of our approach tested by queries annotated by two known entity linking tools, REL and DBpedia-Spotlight. The experiments are performed on the standard TREC 2004 Robust and MSMARCO collections. By using the REL method, for queries whose all terms are annotated and whose average annotation scores are greater than or equal to 0.75, our approach achieves the maximum nDCG@5 score (1.000). Thus, using our approach with any other document retrieval method would be an added value, unless that method achieves the maximum nDCG@5 score for those highly annotated queries.

Topic discovery is finding the main idea of large amounts of textual data. It indicates the recurring topics in the documents, allowing an overview of the texts. Current topic discovery models receive the texts, with or without pre-processing of Natural Language Processing. The processing consists of stopwords removal, text cleaning and normalization (lowercase conversion). A topic discovery model that receives texts with or without processing generates general topics since the input data is many uncategorized texts. The general topics do not offer a detailed overview of the input texts, and manual text categorization is a time-consuming and tedious task. Accordingly, it is necessary to integrate an automatic text classification task in the topic discovery process to obtain specific topics with their top words that contain relevant relationships based on belonging to a class. Text classification performs a word analysis that makes up a document to decide what class or category is being identified; then, integrating the text classification before a topic discovery process will provide latent topics depicted by top words with a high coherence in each topic based on the previously obtained classes. Therefore, this paper exposes a approach that integrates text classification into topic discovery from large amounts of English textual data, such as 20-Newsgroup and Reuters corpora. The text classification is accomplished with a Convolutional Neural Network(CNN) incorporating three embedding models based on semantic relationships. The topic discovery over categorized texts is realized with Latent Dirichlet Analysis(LDA), Probabilistic Latent Semantic Analysis(PLSA), and Latent Semantic Analysis(LSA) algorithms. An evaluation process was performed based on the normalized topic coherence metric. The 20-Newsgroup corpus was classified, and twenty topics with ten top words were discovered for each class, obtaining 0.1723 normalized topic coherence when applying LDA, 0.1622 with LSA, and 0.1716 with PLSA. The Reuters corpus was also classified, obtaining 0.1441 normalized topic coherence when applying the LDA algorithm to obtain 20 topics for each class.

With the rapid development of Internet and the widely usage of smart devices, massive multimedia data are generated, collected, stored and shared on the Internet. This trend makes cross-modal retrieval problem become a hot issue in this years. Many existing works pay attentions on correlation learning to generate a common subspace for cross-modal correlation measurement, and others uses adversarial learning technique to abate the heterogeneity of multi-modal data. However, very few works combine correlation learning and adversarial learning to bridge the inter-modal semantic gap and diminish cross-modal heterogeneity. This paper propose a novel cross-modal retrieval method, named ALSCOR, which is an end-to-end framework to integrate cross-modal representation learning, correlation learning and adversarial. CCA model, accompanied by two representation model, VisNet and TxtNet is proposed to capture non-linear correlation. Beside, intra-modal classifier and modality classifier are used to learn intra-modal discrimination and minimize the inter-modal heterogeneity. Comprehensive experiments are conducted on three benchmark datasets. The results demonstrate that the proposed ALSCOR has better performance than the state-of-the-arts.

The sentiment of a word varies based on its context of usage: the words used around it and the part-of-speech it is used as. This paper proposes a technique to suggest the sentiment of a word by combining its part-of-speech and the semantic similarities of its co-occurrences with both context-specific and pre-trained embeddings to achieve powerful and fast results. A study was conducted across domains and sub-domains to measure variance of sentiment by switching domains and switching context within the same domain. Re-scoring a commonly used polarity lexicon showed that 10% of words changed scores while switching domains and 8% changed scores within domains while switching context. Part of Speech analysis on 65,353 commonly used sentiment lexicons showed that 81% of sentiment bearing (non-neutral) lexicons were of the tags NN (Common Noun), JJ (Adjective) or NNS (Proper Noun).

This article presents a succinct overview of the progress, obstacles, and uses of semantic segmentation and instance segmentation within the forestry domain. The objective of this review is to conduct a critical analysis of the current literature pertaining to segmentation techniques and provide a methodical summary of their impact on forestry-related activities, including but not limited to tree species classification, forest inventory, and ecological monitoring such as retrieval of dominant tree species. Through the process of synthesizing pivotal discoveries from multiple studies, this comprehensive analysis provides valuable perspectives on the present status of research and highlights prospective areas for further exploration. The primary topics addressed encompass the approach employed for executing the examination, the fundamental discoveries associated with semantic segmentation and instance segmentation in the domain of forestry, and the ramifications of these discoveries for the discipline. The results indicate that the utilization of semantic segmentation methods has been efficacious in the field of forestry for the precise identification of tree species. Such methods also aid in tracking of deforested regions over the course of time by separating other land-use classes from forested regions. Additionally, the employment of instance segmentation techniques exhibits potential in the demarcation of individual trees. Instance segmentation offers promising results due to deep learning models based on forest point clouds. However, several challenges persist in the successful implementation of semantic segmentation methods such as the presence of occlusions, overlapping branches, and intricate structures hampers the accurate segmentation of trees. Additionally, instance segmentation approaches that utilize models are mostly trained by using laser scanning data based on forest types which are typically trained on specific laser scanning data and forest types that create limitations in generalization from high to low resolution point clouds. Due to this reason, the existing approaches often struggle with handling these complex structures, leading to the need for manual methods for extracting measurements from forest point clouds. The review culminates by underscoring the necessity for additional research to tackle current obstacles and augment the precision and relevance of segmentation methodologies in the field of forestry. In general, the present article provides a significant reference for scholars and professionals who are interested in utilizing segmentation techniques in the field of forestry.

Glycosyl inositol phospho ceramides (GIPCs) are the major sphingolipids on earth as they account for a considerable fraction of the total lipids in plants and fungi which in turn represent a large portion of the biomass on earth. Despite their obvious importance, GIPC analysis remains challenging due to the lack of commercial standards and automated annotation software. In this work, we introduce a novel GIPC glycolipidomics workflow based on reversed-phase ultra-high pressure liquid chromatography coupled to high-resolution mass spectrometry. For the first time, automated GIPC assignment was performed using the open-source software Lipid Data Analyzer based on platform-independent decision rules. Four different plant samples (salad, spinach, raspberry, strawberry) were analyzed and revealed 64 GIPCs based on accurate mass, characteristic MS2 fragments and matching retention times. Relative quantification using lactosyl ceramide for internal standardization revealed GIPC t18:1/h24:0 as the most abundant species in all plants. Depending on the plant sample, GIPCs contained mainly amine, N-acetylamine or hydroxyl residues. Most GIPCs revealed a Hex-HexA-IPC core and contained a ceramide part with a trihydroxylated t18:0 or t18:1 long chain base and hydroxylated fatty acid chains ranging from 16 to 26 carbon atoms in length (h16:0 – h26:0). Interestingly, six GIPCs containing t18:2 were observed in raspberry, which was not reported so far. The presented workflow supports the characterization of different plant samples by automatic GIPC assignment potentially leading to the identification of new GIPCs. For the first time, automated high‑throughput profiling of these complex glycolipids is possible by liquid chromatography-high-resolution mass spectrometry and subsequent automated glycolipid annotation based on decision rules.

The fusion of machine learning, biomedical, and bioengineering research offers novel ways to understand, diagnose, and treat various health conditions. However, the complexities of biomedical and bioengineering data, coupled with the intricate process of developing and deploying machine learning solutions, often pose significant challenges to researchers in these fields. We introduce a new Automatic Semantic Machine Learning Microservice Framework (AIMS) that addresses these challenges by automating key aspects of the machine learning pipeline, from data preprocessing to model evaluation. Our proposed framework emphasizes model interpretability, the integration of domain knowledge, and the efficient handling of biomedical data. Furthermore, it incorporates self-supervised knowledge learning strategies, enabling the automatic generation, optimization, and continuous adaptation of machine learning models in response to new tasks and data. We illustrate the potential of our framework through three case studies in biomedical research, showcasing its capacity to streamline research processes, improve scientific exploration quality, and provide a foundation for significant breakthroughs.

Semantic jokes involve resolving an incongruity emerging from wordplay or from violation of world knowledge. Research has shown individuals with autism spectrum disorder (ASD) demonstrate lower performance on humor tasks involving social situations, but less is known about their semantic joke comprehension. This study examined semantic joke comprehension among adolescents with ASD, and its possible relationship to vocabulary size, theory of mind (ToM), and idiom comprehension. Thirty-two adolescents with ASD and 32 typically developed (TD) peers participated. Semantic joke comprehension was assessed via multiple-choice questionnaire and time-limited computer program. Vocabulary, ToM abilities, and idiom comprehension were also tested. Results revealed that adolescents with ASD were as fast in processing semantic jokes as their age- and vocabulary-matched TD peers but less accurate. Age and idiom comprehension contributed significantly to semantic joke comprehension among both groups. As semantic joke comprehension is based on incongruity resolution, the greater difficulties in comprehension among the adolescents with ASD may be due to deficits in simultaneously retaining two alternative interpretations and selecting the relevant one. Like the TD group, semantic joke comprehension among the ASD group appeared more developed with age. Future neuroimaging studies should test semantic brain region involvement in semantic joke comprehension in ASD.

Semantic communication is not obsessed with improving the accuracy of transmitted symbols, but is concerned with expressing the desired meaning that the symbol sequence exactly carried. However, the generation and measurement of semantic messages are still an open problem. Expansion combines simple things into complex systems and even generates intelligence, which is consistent with the evolution of the human language system. We apply this idea to semantic communication system, quantifying and transmitting semantics by symbol sequences, and investigate the semantic information system in a similar way as Shannon did for digital communication systems. This work was the first to propose the concept of semantic expansion and knowledge collision, which may provide a new paradigm for semantic communications. We believe that expansion and collision will be the cornerstone of semantic information theory.

Poplar and willow species in the Salicaceae are dioecious, yet have been shown to use different sex determination systems located on different chromosomes. Willows in the section Vetrix are interesting for comparative studies of sex determination systems, yet genomic resources for these species are still quite limited. Only a few annotated reference genome assemblies are available, despite many species in use in breeding programs. Here we present de novo assemblies and annotations of 11 shrub willow genomes from six species. Copy number variation of candidate sex determination genes within each genome was characterized and revealed remarkable differences in putative master regulator gene duplication and deletion. We also analyzed copy number and expression of candidate genes involved in floral secondary metabolism, and identified substantial variation across genotypes, which can be used for parental selection in breeding programs. Lastly, we report on a genotype that produces only female descendants and identified gene presence/absence variation in the mitochondrial genome that may be responsible for this unusual inheritance.

Haze always shrouds satellite images, obscuring valuable geographic information for military surveillance, natural calamity surveillance and mineral resource exploration. Satellite image dehazing (SID) provides the possibility for better applications of satellite images. Most of the existing dehazing methods are tailored for natural images and are not very effective for satellite images with non-homogeneous haze since the semantic structure information and inconsistent attenuation are not fully considered. To tackle this problem, this study proposes a hierarchical semantic-guided contextual structure-aware network (SCSNet) for satellite image dehazing. Specifically, a hybrid CNN-transformer architecture integrated with a hierarchical semantic guidance (HSG) module is presented to learn semantic structure information by synergetically complementing local representation from non-local features. Furthermore, a cross-layer fusion (CLF) module is specially designed to replace the traditional skip connection during the feature decoding stage, so as to reinforce the attention to the spatial regions and feature channels with more serious attenuation. The results on the SateHaze1k, RS-Haze, and RSID datasets demonstrate that the proposed SCSNet can achieve effective dehazing and outperforms existing state-of-the-art methods.

The significance of Linked Open Data datasets for traffic information goes beyond just including open traffic data. It extends to incorporating links to other relevant thematic datasets available on the web. This enables federated queries across different data platforms from various countries and sectors, such as transport, geospatial, environmental, weather, and more. Businesses, researchers, national operators, administrators, and citizens at large can benefit from having dynamic traffic open data connected to heterogeneous datasets across different Member States. This paper focuses on the development of a semantic model that enhances the basic service of accessing open traffic data through a LOD-enhanced Traffic Information System in alignment with the ITS Directive (2010/40/EU). The objective is not limited to just viewing or downloading data but also to improve the extraction of meaningful information and enable other types of services that are only achievable through LOD. By structuring the information using the RDF format meant for machines and employing SPARQL for querying, LOD allows for comprehensive and unified access to all datasets. Considering that the European standard DATEX II is widely used in many priority areas and services mentioned in the ITS Directive, LOD DATEX II was developed as a complementary approach to DATEX II XML. This facilitates the accessibility and comprehensibility of European traffic data and services. As part of this development, an ontological model called dtx_srti, based on the DATEX II Ontology, was created to support these efforts.

Simple measures often couldn’t count a deep complexity. In the case of semantic complexity, conventional readability formulas share a common style, a common sort of achievements and a common borders of limitation: These formulas lack a semantics-aware approach and as a result, a precise measurement of semantic complexity couldn’t be done. In this paper, we introduce DASTEX, a novel semantics-aware complexity measure for semantic complexity of text. By DASTEX, a new layer of complexity analysis are opened for NLP, cognitive and computational tasks. This measure benefits from an intuitionistic underlying formal model which consider semantic as a lattice of intuitions. This yields to a well-defined definition for semantic of a text and its complexity. DASTEX is a practical analysis method upon this formal model. So a complete suite of idea, model and method are prepared to result in a simple but yet deep measure for semantic complexity of text. The evaluation of the proposed approach is done by 4 Experiments. The results show DASTEX is capable of measuring the semantic complexity of text in 6 application-tasks.

Dictionary Learning (DL) and Sparse Representation (SR) based Classifier have impacted greatly on the classification performance and has had good recognition rate on image data. In Video Semantic Analysis (VSA), the local structure of video data contains more vital discriminative information needed for classification. However, this has not been fully exploited by the current DL based approaches. Besides, similar coding findings are not being realized from video features with the same video category. Based on the issues stated afore, a novel learning algorithm, called Sparsity based Locality-Sensitive Discriminative Dictionary Learning(SLSDDL) for VSA is proposed in this paper. In the proposed algorithm, a discriminant loss function for the category based on sparse coding of the sparse coefficients is introduced into structure of Locality-Sensitive Dictionary Learning (LSDL) algorithm. Finally, the sparse coefficients for the testing video feature sample are solved by the optimized method of SLSDDL and the classification result for video semantic is obtained by minimizing the error between the original and reconstructed samples. The experiment results show that, the proposed SLSDDL significantly improves the performance of video semantic detection compared with the comparative state-of-the-art approaches. Moreover, the robustness to various diverse environments in video is also demonstrated, which proves the universality of the novel approach.

With the proliferation of locating devices, more and more raw spatial trajectories are formed, and many works enrich these raw trajectories with semantics, and mine patterns from both raw and semantic trajectories, but access control of spatial trajectories is not considered yet. We present a multi-policy secure model for semantic spatial trajectories. In our model, Mandatory Access Control, Role Based Access Control and Discretionary Access control are all enforced, separately and combined, and we represent the model semi-formally in Ontology Web Language.

Recent advancements in neural machine translation (NMT) offer promising potential for generating cross-language clinical natural language processing (NLP) resources. There is a pressing need to be able to foster the development of clinical NLP tools that extract key clinical entities in a comparable way for a multitude of medical application scenarios, hindered by lack of multilingual annotated data. This study explores the efficacy of using NMT and annotation projection techniques with expert in the loop validation to develop named entity recognition (NER) systems for an under resourced target language (Catalan) by leveraging Spanish clinical corpora annotated by domain experts. We employed a state-of-the-art NMT system to translate three clinical case corpora. The translated annotations were then projected onto the target language texts and subsequently validated and corrected by clinical domain experts. The efficacy of the resulting NER systems was evaluated against manually annotated test sets in the target language. Our findings indicate that this approach not only facilitates the generation of high-quality training data for the target language (Catalan) but also demonstrates the potential to extend this methodology to other languages, thereby enhancing multilingual clinical NLP resource development. The generated corpora and components are publicly accessible, providing potentially a valuable resource for further research and application in multilingual clinical settings: https://zenodo.org/doi/10.5281/zenodo.13133124.

Visual inertial SLAM algorithms enable robots to autonomously explore and navigate in unknown scenes. However, most of the current SLAM systems highly rely on static environment assumptions, which fails in the exsitence of motional objects in the real environment. To improve the robustness and localization accuracy of SLAM systems in dynamic scenes, this paper proposes a visual-inertial SLAM framework that fuses semantic and geometric information, called DA-VINS. First, this paper presents a dynamic object classification method based on feature’s current motion state, which obtains temporary static features in the environment. Secondly, a features dynamics check module based on IMU prior and adjacent frame’s geometry constraint is designed to calculate dynamic factors. It also verifies the classification results of temporary static features. Finally, a dynamic adaptive bundle adjustment module based on the features’ dynamic factors is designed to adjust the weights of features in nonlinear optimization. We evaluated our method in public and our dataset. The results show that D-VINS is one of the most real-time, accurate, and robust systems in dynamic scenes.

We review some semantical aspects of probability bounds from Boole’s “conditions on possible experience” violated by quantum mechanics. We also speculate about emerging space-time categories as an epiphenomenon of quantization and the resulting breakdown of relativity theory by non-unitary and non-linear processes.

The digital world is increasingly invading our reality, which leads to the formation of a significant reflection of the processes and activities taking place in the smart city. Such activities include well-known urban events, celebrations, and those with a very local character. Due to the mass occurrence, events have a comparable influence on the formation of the spirit and the urban atmosphere. This work presents an enhanced semantic version of the ConvTree algorithm - SemConvTree. It allows considering the semantic component of the data obtained by using semi-supervised learning of topic modeling ensemble (consisting of improved models BERTopic, TSB-ARTM, SBert-Zero-Shot). We also present an improved event search algorithm based on both statistical evaluations and semantic analysis of posts. This algorithm allows fine-tuning the mechanism of discovering the required entities with the specified particularity (such as a particular topic). Experimental studies were conducted within the area of New York City. They showed an improvement in the detection of posts devoted to events (about 40% higher f1-score) due to the accurate handling of events of different scales. These results lead in the long term to talk about the potential perspective in creating a semantic platform for the analysis and monitoring of urban events in the future.

This paper deals with wh-in situ elements (i.e. wh-elements that stay in the argument position) in islands such as adverbial clauses, conditionals, relative clauses, complement clauses, etc. extracted from corpora of Italian and Spanish. I will show that there are two types of wh-in situ embedded inside an island in these languages. One type is a real genuine question. Another type is an echo question. There are several approaches that convincingly account for the insensitivity of echo questions to islands. The genuine question type is still a puzzle for semantic and syntactic approaches. It turns out that wh-in situ questions with a genuine question interpretation are only possible inside islands that are not marked for sentence type and do not contain any operator that could block the question interpretation of the wh-in situ. This way question alternatives can be passed higher up the clause until they meet a question operator in the matrix clause that interprets them. Consequently, the question is well-formed and interpreted without any problem. Real islands contain semantic operators or quantifiers that interpret question alternatives triggered by wh-in situ until they reach the question morpheme to be interpreted as question alternatives. The result is that the derivation crashes.

Simultaneous Localization and Mapping (SLAM), as one of the core technologies in intelligent robotics, has gained substantial attention in recent years. Addressing the limitations of SLAM systems in dynamic environments, this research proposes a system specifically designed for plant factory transportation environments, named GY-SLAM. GY-SLAM incorporates a lightweight target detection network GY based on YOLOv5, which utilizes GhostNet as the backbone network. This integration is further enhanced with CoordConv coordinate convolution, CARAFE up-sampling operators, and SE attention mechanism, leading to simultaneous improvements in detection accuracy and model complexity reduction. While improving [email protected] by 0.514%, the model simultaneously reduces the number of parameters by 43.976%, computational cost by 46.488%, and model size by 41.752%. Additionally, the system constructs pure static octree maps and grid maps. Tests conducted on the TUM dataset and a proprietary dataset demonstrate that GY-SLAM significantly outperforms ORB-SLAM3 in dynamic scenarios in terms of system local-ization accuracy and robustness. It shows a remarkable 92.58% improvement in RMSE for Absolute Trajectory Error (ATE). Compared to YOLOv5s, the GY model brings a 41.5944% improvement in detection speed and a 17.7975% increase in SLAM operation speed to the system, indicating strong competitiveness and real-time capabilities. These results validate the effectiveness of GY-SLAM in dynamic environments and provide substantial support for the automation of logistics tasks by robots in specific contexts.

The Swiss Personalized Health Network has developed a national framework for enabling the semantic representation of health data within a Knowledge Graph. This framework has been implemented in all Swiss university hospitals, promoting seamless sharing and integration of clinical routine data with other health-related data, including omics and clinical research data. While research projects often have flexibility in selecting terminologies and specific versions, historical clinical routine data are typically coded for billing or administrative purposes using predefined terminologies in various (sometimes even unknown) versions over time. Some of these terminologies do not adhere to best practices for ontology design, presenting significant challenges to the retrospective re-use of such coded data for research. Common issues with these terminologies include the lack of machine-readable traceability across versions and non-adherence to FAIR principles. Terms from older versions frequently disappear in newer ones, making it challenging to distinguish outdated from invalid terms. Additionally, 'semantic drift' occurs, where the meaning of terms changes across versions. To address these challenges, we have implemented FAIR and historized versions of ATC, CHOP, and ICD-10-GM. We represent each version in RDF using versioned URIs and track meaning changes between versions in a machine-readable way using OWL and RDFS. The integration of these historized terminologies into our quality control framework, based on SHACLs, enables comprehensive data quality control in hospitals and empowers researchers to effectively utilize this data. Our work aims to bridge the gap between health data coded in different terminology versions, ensuring a consistent and reliable semantic representation.