Haploview: analysis and visualization of LD and haplotype maps.

Barrett JC; Fry B; Maller J; Daly MJ

doi:10.1093/bioinformatics/bth457

Haploview: analysis and visualization of LD and haplotype maps.

Barrett JC ¹,

Fry B ,

Maller J ,

Daly MJ

Affiliations

1. Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA.
Authors
Barrett JC¹
(1 author)

ORCIDs linked to this article

Bioinformatics (Oxford, England), 05 Aug 2004, 21(2):263-265
https://doi.org/10.1093/bioinformatics/bth457 PMID: 15297300

Abstract

Unlabelled

Research over the last few years has revealed significant haplotype structure in the human genome. The characterization of these patterns, particularly in the context of medical genetic association studies, is becoming a routine research activity. Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface.

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http://www.broad.mit.edu/mpg/haploview/

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[email protected]

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Read article at publisher's site: https://doi.org/10.1093/bioinformatics/bth457

Read article for free, from open access legal sources, via Unpaywall: https://academic.oup.com/bioinformatics/article-pdf/21/2/263/456887/bth457.pdf

References

Articles referenced by this article (9)

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Haploview: analysis and visualization of LD and haplotype maps.

Affiliations

Authors

ORCIDs linked to this article

Abstract

Unlabelled

Availability

Contact

Full text links

References

High-resolution haplotype structure in the human genome.

The structure of haplotype blocks in the human genome.

Haplotype-based identification of a microsomal transfer protein marker associated with the human lifespan.

The fine-scale structure of recombination rate variation in the human genome.

Linkage disequilibrium in the human genome.

Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease.

Genetic variation in DLG5 is associated with inflammatory bowel disease.

Association of the ADAM33 gene with asthma and bronchial hyperresponsiveness.

Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation.

Citations & impact

Impact metrics

Citations of article over time

Alternative metrics

Smart citations by scite.ai
Explore citation contexts and check if this article has been supported or disputed.
https://scite.ai/reports/10.1093/bioinformatics/bth457

Article citations

Early exposure to phosphorus starvation induces genetically determined responses in Sorghum bicolor roots.

Dissecting the genetic basis of resistance to Soil-borne cereal mosaic virus (SBCMV) in durum wheat by bi-parental mapping and GWAS.

Genome-wide association study of Verticillium longisporum resistance in Brassica genotypes.

HASCH - A high-throughput amplicon-based SNP-platform for medicinal cannabis and industrial hemp genotyping applications.

Association of ADAMTS-5 gene polymorphisms with the susceptibility to knee osteoarthritis in a Chinese Han population.

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Search life-sciences literature (44,835,121 articles, preprints and more)

Haploview: analysis and visualization of LD and haplotype maps.

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Affiliations

Authors

ORCIDs linked to this article

Abstract

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References

Citations & impact

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Wikipedia (2)

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