Svoboda | Graniru | BBC Russia | Golosameriki | Facebook

Information estimation using nonparametric copulas

Houman Safaai, Arno Onken, Christopher D. Harvey, and Stefano Panzeri
Phys. Rev. E 98, 053302 – Published 5 November 2018

Abstract

Estimation of mutual information between random variables has become crucial in a range of fields, from physics to neuroscience to finance. Estimating information accurately over a wide range of conditions relies on the development of flexible methods to describe statistical dependencies among variables, without imposing potentially invalid assumptions on the data. Such methods are needed in cases that lack prior knowledge of their statistical properties and that have limited sample numbers. Here we propose a powerful and generally applicable information estimator based on nonparametric copulas. This estimator, called the nonparametric copula-based estimator (NPC), is tailored to take into account detailed stochastic relationships in the data independently of the data's marginal distributions. The NPC estimator can be used both for continuous and discrete numerical variables and thus provides a single framework for the mutual information estimation of both continuous and discrete data. By extensive validation on artificial samples drawn from various statistical distributions, we found that the NPC estimator compares well against commonly used alternatives. Unlike methods not based on copulas, it allows an estimation of information that is robust to changes of the details of the marginal distributions. Unlike parametric copula methods, it remains accurate regardless of the precise form of the interactions between the variables. In addition, the NPC estimator had accurate information estimates even at low sample numbers, in comparison to alternative estimators. The NPC estimator therefore provides a good balance between general applicability to arbitrarily shaped statistical dependencies in the data and shows accurate and robust performance when working with small sample sizes. We anticipate that the nonparametric copula information estimator will be a powerful tool in estimating mutual information in a broad range of data.

  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
6 More
  • Received 25 July 2018

DOI:https://doi.org/10.1103/PhysRevE.98.053302

©2018 American Physical Society

Physics Subject Headings (PhySH)

Interdisciplinary PhysicsStatistical Physics & ThermodynamicsPhysics of Living Systems

Authors & Affiliations

Houman Safaai1,2,*, Arno Onken3, Christopher D. Harvey1, and Stefano Panzeri2

  • 1Department of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115, USA
  • 2Istituto Italiano di Tecnologia, 38068 Rovereto, Italy
  • 3School of Informatics, University of Edinburgh, Edinburgh EH8 9AB, United Kingdom

Article Text (Subscription Required)

Click to Expand

References (Subscription Required)

Click to Expand
Issue

Vol. 98, Iss. 5 — November 2018

Reuse & Permissions
Access Options
CHORUS

Article Available via CHORUS

Download Accepted Manuscript
Author publication services for translation and copyediting assistance advertisement

Authorization Required


×
×

Images

×

Sign up to receive regular email alerts from Physical Review E

Log In

Cancel
×

Search


Article Lookup

Paste a citation or DOI

Enter a citation
×