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  A recent bottleneck of Y chromosome diversity coincides with a global change in culture

  • Monika Karmin,
  • Lauri Saag,
  • Mário Vicente,
  • Melissa A. Wilson Sayres,
  • Mari Järve,
  • Ulvi Gerst Talas,
  • Siiri Rootsi,
  • Anne-Mai Ilumäe,
  • Reedik Mägi,
  • Mario Mitt,
  • Luca Pagani,
  • Tarmo Puurand,
  • Zuzana Faltyskova,
  • Florian Clemente,
  • Alexia Cardona,
  • Ene Metspalu,
  • Hovhannes Sahakyan,
  • Bayazit Yunusbayev,
  • Georgi Hudjashov,
  • Michael DeGiorgio,
  • Eva-Liis Loogväli,
  • Christina Eichstaedt,
  • Mikk Eelmets,
  • Gyaneshwer Chaubey,
  • Kristiina Tambets,
  • Sergei Litvinov,
  • Maru Mormina,
  • Yali Xue,
  • Qasim Ayub,
  • Grigor Zoraqi,
  • Thorfinn Sand Korneliussen,
  • Farida Akhatova,
  • Joseph Lachance,
  • Sarah Tishkoff,
  • Kuvat Momynaliev,
  • François-Xavier Ricaut,
  • Pradiptajati Kusuma,
  • Harilanto Razafindrazaka,
  • Denis Pierron,
  • Murray P. Cox,
  • Gazi Nurun Nahar Sultana,
  • Rane Willerslev,
  • Craig Muller,
  • Michael Westaway,
  • David Lambert,
  • Vedrana Skaro,
  • Lejla Kovačevic´,
  • Shahlo Turdikulova,
  • Dilbar Dalimova,
  • Rita Khusainova,
  • Natalya Trofimova,
  • Vita Akhmetova,
  • Irina Khidiyatova,
  • Daria V. Lichman,
  • Jainagul Isakova,
  • Elvira Pocheshkhova,
  • Zhaxylyk Sabitov,
  • Nikolay A. Barashkov,
  • Pagbajabyn Nymadawa,
  • Evelin Mihailov,
  • Joseph Wee Tien Seng,
  • Irina Evseeva,
  • Andrea Bamberg Migliano,
  • Syafiq Abdullah,
  • George Andriadze,
  • Dragan Primorac,
  • Lubov Atramentova,
  • Olga Utevska,
  • Levon Yepiskoposyan,
  • Damir Marjanovic´,
  • Alena Kushniarevich,
  • Doron M. Behar,
  • Christian Gilissen,
  • Lisenka Vissers,
  • Joris A. Veltman,
  • Elena Balanovska,
  • Miroslava Derenko,
  • Boris Malyarchuk,
  • Andres Metspalu,
  • Sardana Fedorova,
  • Anders Eriksson,
  • Andrea Manica,
  • Fernando L. Mendez,
  • Tatiana M. Karafet,
  • Krishna R. Veeramah,
  • Neil Bradman,
  • Michael F. Hammer,
  • Ludmila P. Osipova,
  • Oleg Balanovsky,
  • Elza K. Khusnutdinova,
  • Knut Johnsen,
  • Maido Remm,
  • Mark G. Thomas,
  • Chris Tyler-Smith,
  • Peter A. Underhill,
  • Eske Willerslev,
  • Rasmus Nielsen,
  • Mait Metspalu,
  • Richard Villems,
  • and Toomas Kivisild

  Genome Res. April 2015 25: 459-466; Published in Advance March 13, 2015, doi:10.1101/gr.186684.114
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  The role of DNA methylation in directing the functional organization of the cancer epigenome

  • Fides D. Lay,
  • Yaping Liu,
  • Theresa K. Kelly,
  • Heather Witt,
  • Peggy J. Farnham,
  • Peter A. Jones,
  • and Benjamin P. Berman

  Genome Res. April 2015 25: 467-477; Published in Advance March 6, 2015, doi:10.1101/gr.183368.114
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  Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers

  • Xabier Agirre,
  • Giancarlo Castellano,
  • Marien Pascual,
  • Simon Heath,
  • Marta Kulis,
  • Victor Segura,
  • Anke Bergmann,
  • Anna Esteve,
  • Angelika Merkel,
  • Emanuele Raineri,
  • Lidia Agueda,
  • Julie Blanc,
  • David Richardson,
  • Laura Clarke,
  • Avik Datta,
  • Nuria Russiñol,
  • Ana C. Queirós,
  • Renée Beekman,
  • Juan R. Rodríguez-Madoz,
  • Edurne San José-Enériz,
  • Fang Fang,
  • Norma C. Gutiérrez,
  • José M. García-Verdugo,
  • Michael I. Robson,
  • Eric C. Schirmer,
  • Elisabeth Guruceaga,
  • Joost H.A. Martens,
  • Marta Gut,
  • Maria J. Calasanz,
  • Paul Flicek,
  • Reiner Siebert,
  • Elías Campo,
  • Jesús F. San Miguel,
  • Ari Melnick,
  • Hendrik G. Stunnenberg,
  • Ivo G. Gut,
  • Felipe Prosper,
  • and José I. Martín-Subero

  Genome Res. April 2015 25: 478-487; Published in Advance February 2, 2015, doi:10.1101/gr.180240.114
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  The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer

  • Ronan Chaligné,
  • Tatiana Popova,
  • Marco-Antonio Mendoza-Parra,
  • Mohamed-Ashick M. Saleem,
  • David Gentien,
  • Kristen Ban,
  • Tristan Piolot,
  • Olivier Leroy,
  • Odette Mariani,
  • Hinrich Gronemeyer,
  • Anne Vincent-Salomon,
  • Marc-Henri Stern,
  • and Edith Heard

  Genome Res. April 2015 25: 488-503; Published in Advance February 4, 2015, doi:10.1101/gr.185926.114
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  Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

  • Elizabeth Ing-Simmons,
  • Vlad C. Seitan,
  • Andre J. Faure,
  • Paul Flicek,
  • Thomas Carroll,
  • Job Dekker,
  • Amanda G. Fisher,
  • Boris Lenhard,
  • and Matthias Merkenschlager

  Genome Res. April 2015 25: 504-513; Published in Advance February 12, 2015, doi:10.1101/gr.184986.114
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  A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

  • Claus Schertel,
  • Monica Albarca,
  • Claudia Rockel-Bauer,
  • Nicholas W. Kelley,
  • Johannes Bischof,
  • Korneel Hens,
  • Erik van Nimwegen,
  • Konrad Basler,
  • and Bart Deplancke

  Genome Res. April 2015 25: 514-523; Published in Advance January 7, 2015, doi:10.1101/gr.181305.114
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  Origin and domestication of papaya Y^h chromosome

  • Robert VanBuren,
  • Fanchang Zeng,
  • Cuixia Chen,
  • Jisen Zhang,
  • Ching Man Wai,
  • Jennifer Han,
  • Rishi Aryal,
  • Andrea R. Gschwend,
  • Jianping Wang,
  • Jong-Kuk Na,
  • Lixian Huang,
  • Lingmao Zhang,
  • Wenjing Miao,
  • Jiqing Gou,
  • Jie Arro,
  • Romain Guyot,
  • Richard C. Moore,
  • Ming-Li Wang,
  • Francis Zee,
  • Deborah Charlesworth,
  • Paul H. Moore,
  • Qingyi Yu,
  • and Ray Ming

  Genome Res. April 2015 25: 524-533; Published in Advance March 11, 2015, doi:10.1101/gr.183905.114
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  Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

  • Itai Sharon,
  • Michael Kertesz,
  • Laura A. Hug,
  • Dmitry Pushkarev,
  • Timothy A. Blauwkamp,
  • Cindy J. Castelle,
  • Mojgan Amirebrahimi,
  • Brian C. Thomas,
  • David Burstein,
  • Susannah G. Tringe,
  • Kenneth H. Williams,
  • and Jillian F. Banfield

  Genome Res. April 2015 25: 534-543; Published in Advance February 9, 2015, doi:10.1101/gr.183012.114
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