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Table of Contents
January 2020; 30 (1)
Research
Select this article
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation
Amanda J. Price
,
Taeyoung Hwang
,
Ran Tao
,
Emily E. Burke
,
Anandita Rajpurohit
,
Joo Heon Shin
,
Thomas M. Hyde
,
Joel E. Kleinman
,
Andrew E. Jaffe
,
and
Daniel R. Weinberger
Genome Res.
January 2020
30
:
1
-
11
;
Published in Advance
December 18, 2019
,
doi:
10.1101/gr.250217.119
Abstract
Full Text
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Supplemental Material
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Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer
Peng Mao
,
Michael J. Smerdon
,
Steven A. Roberts
,
and
John J. Wyrick
Genome Res.
January 2020
30
:
12
-
21
;
Published in Advance
December 23, 2019
,
doi:
10.1101/gr.253146.119
Abstract
Full Text
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Supplemental Material
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A genome-wide long noncoding RNA CRISPRi screen identifies
PRANCR
as a novel regulator of epidermal homeostasis
Pengfei Cai
,
Auke B.C. Otten
,
Binbin Cheng
,
Mitsuhiro A. Ishii
,
Wen Zhang
,
Beibei Huang
,
Kun Qu
,
and
Bryan K. Sun
Genome Res.
January 2020
30
:
22
-
34
;
Published in Advance
December 4, 2019
,
doi:
10.1101/gr.251561.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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Heterodimerization of TFAP2 pioneer factors drives epigenomic remodeling during neural crest specification
Megan Rothstein
and
Marcos Simoes-Costa
Genome Res.
January 2020
30
:
35
-
48
;
Published in Advance
December 17, 2019
,
doi:
10.1101/gr.249680.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
Methods
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Copolymerization of single-cell nucleic acids into balls of acrylamide gel
Siran Li
,
Jude Kendall
,
Sarah Park
,
Zihua Wang
,
Joan Alexander
,
Andrea Moffitt
,
Nissim Ranade
,
Cassidy Danyko
,
Bruno Gegenhuber
,
Stephan Fischer
,
Brian D. Robinson
,
Herbert Lepor
,
Jessica Tollkuhn
,
Jesse Gillis
,
Eric Brouzes
,
Alex Krasnitz
,
Dan Levy
,
and
Michael Wigler
Genome Res.
January 2020
30
:
49
-
61
;
Published in Advance
November 14, 2019
,
doi:
10.1101/gr.253047.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
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Identification of pathogenic variant enriched regions across genes and gene families
Eduardo Pérez-Palma
,
Patrick May
,
Sumaiya Iqbal
,
Lisa-Marie Niestroj
,
Juanjiangmeng Du
,
Henrike O. Heyne
,
Jessica A. Castrillon
,
Anne O'Donnell-Luria
,
Peter Nürnberg
,
Aarno Palotie
,
Mark Daly
,
and
Dennis Lal
Genome Res.
January 2020
30
:
62
-
71
;
Published in Advance
December 23, 2019
,
doi:
10.1101/gr.252601.119
Abstract
Full Text
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Supplemental Material
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Quantitative prediction of enhancer–promoter interactions
Polina S. Belokopytova
,
Miroslav A. Nuriddinov
,
Evgeniy A. Mozheiko
,
Daniil Fishman
,
and
Veniamin Fishman
Genome Res.
January 2020
30
:
72
-
84
;
Published in Advance
December 2, 2019
,
doi:
10.1101/gr.249367.119
Abstract
Full Text
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Predicting transfer RNA gene activity from sequence and genome context
Bryan P. Thornlow
,
Joel Armstrong
,
Andrew D. Holmes
,
Jonathan M. Howard
,
Russell B. Corbett-Detig
,
and
Todd M. Lowe
Genome Res.
January 2020
30
:
85
-
94
;
Published in Advance
December 19, 2019
,
doi:
10.1101/gr.256164.119
Abstract
Full Text
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Supplemental Material
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CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500
Drosophila
genes conserved in humans
Ping Wei
,
Wen Xue
,
Yun Zhao
,
Guang Ning
,
and
Jiwu Wang
Genome Res.
January 2020
30
:
95
-
106
;
Published in Advance
November 13, 2019
,
doi:
10.1101/gr.250811.119
Abstract
Full Text
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Versatile and robust genome editing with
Streptococcus thermophilus
CRISPR1-Cas9
Daniel Agudelo
,
Sophie Carter
,
Minja Velimirovic
,
Alexis Duringer
,
Jean-François Rivest
,
Sébastien Levesque
,
Jeremy Loehr
,
Mathilde Mouchiroud
,
Denis Cyr
,
Paula J. Waters
,
Mathieu Laplante
,
Sylvain Moineau
,
Adeline Goulet
,
and
Yannick Doyon
Genome Res.
January 2020
30
:
107
-
117
;
Published in Advance
January 3, 2020
,
doi:
10.1101/gr.255414.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
Resources
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Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9
Yonghua Sun
,
Bo Zhang
,
Lingfei Luo
,
De-Li Shi
,
Han Wang
,
Zongbin Cui
,
Honghui Huang
,
Ying Cao
,
Xiaodong Shu
,
Wenqing Zhang
,
Jianfeng Zhou
,
Yun Li
,
Jiulin Du
,
Qingshun Zhao
,
Jun Chen
,
Hanbing Zhong
,
Tao P. Zhong
,
Li Li
,
Jing-Wei Xiong
,
Jinrong Peng
,
Wuhan Xiao
,
Jian Zhang
,
Jihua Yao
,
Zhan Yin
,
Xianming Mo
,
Gang Peng
,
Jun Zhu
,
Yan Chen
,
Yong Zhou
,
Dong Liu
,
Weijun Pan
,
Yiyue Zhang
,
Hua Ruan
,
Feng Liu
,
Zuoyan Zhu
,
Anming Meng
,
and
The ZAKOC Consortium
Genome Res.
January 2020
30
:
118
-
126
;
Published in Advance
December 12, 2019
,
doi:
10.1101/gr.248559.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
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Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow–derived stromal stem cells
Inigo Barrio-Hernandez
,
Abbas Jafari
,
Kristoffer T.G. Rigbolt
,
Philip Hallenborg
,
Virginia Sanchez-Quiles
,
Ida Skovrind
,
Vyacheslav Akimov
,
Irina Kratchmarova
,
Joern Dengjel
,
Moustapha Kassem
,
and
Blagoy Blagoev
Genome Res.
January 2020
30
:
127
-
137
;
Published in Advance
December 12, 2019
,
doi:
10.1101/gr.248286.119
Abstract
Full Text
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Supplemental Material
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The EnteroBase user's guide, with case studies on
Salmonella
transmissions,
Yersinia pestis
phylogeny, and
Escherichia
core genomic diversity
Zhemin Zhou
,
Nabil-Fareed Alikhan
,
Khaled Mohamed
,
Yulei Fan
,
the Agama Study Group
,
and
Mark Achtman
Genome Res.
January 2020
30
:
138
-
152
;
Published in Advance
December 6, 2019
,
doi:
10.1101/gr.251678.119
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
Corrigenda
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Corrigendum: Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging
Jacob C. Kimmel
,
Lolita Penland
,
Nimrod D. Rubinstein
,
David G. Hendrickson
,
David R. Kelley
,
and
Adam Z. Rosenthal
Genome Res.
January 2020
30
:
153_1
;
doi:
10.1101/gr.259820.119
Extract
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Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
Michal Pawlak
,
Katarzyna Z. Kedzierska
,
Maciej Migdal
,
Karim Abu Nahia
,
Jordan A. Ramilowski
,
Lukasz Bugajski
,
Kosuke Hashimoto
,
Aleksandra Marconi
,
Katarzyna Piwocka
,
Piero Carninci
,
and
Cecilia L. Winata
Genome Res.
January 2020
30
:
153_2
;
doi:
10.1101/gr.260273.119
Extract
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January 2020;
30
(1)
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