A Python library to retrieve annotations and notes from Zotero and save them into Markdown files.

Differential analysis of RNA-Seq

Quality assessment of de novo transcriptome assemblies from RNA-Seq data

🗻 Visualization of genome/gene sequence synteny

de novo assembly of RNA-seq data using ABySS

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

Tool to plot synteny and structural rearrangements between genomes

Bioinformatics Rosalind Problems solved by members of the Rosalind Club at Skoltech. 2022

An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.

Blurry Video Frame Interpolation (CVPR20)

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

De novo assembler for single molecule sequencing reads using repeat graphs

Additional functionality for LightGraphs.jl

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Mapped QC analysis program

Estimate the ratio of different directions of single copy in the chloroplast genome

A fast multi-threaded k-mer counter

Add biological annotations to variants in a given VCF file.