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Table of Contents

August 2024

Loss-of-function variants in CHEK2 confer increased risk of developing cancers. Most CHEK2 variants, however, have an unknown effect on the function of the Chk2 protein kinase. This study tested the functional impact of all possible variants in the CHEK2 coding region. The protein structure is shown with a heat map overlay showing the fraction of variants at each position that were damaging to function; red positions indicate that all amino acid changes were damaging, while blue positions indicate all changes were tolerated. Regions the least tolerant to changes (red) include the catalytic site in the kinase domain. See McCarthy-Leo et al. Download August’s cover page

Image Credit: Claire E. McCarthy-Leo

Research Articles

Critical factors for precise and efficient RNA cleavage by RNase Y in Staphylococcus aureus

Alexandre Le Scornet, Ambre Jousselin, Kamila Baumas, Gergana Kostova, Sylvain Durand, Leonora Poljak, Roland Barriot, Eve Coutant, Romain Pigearias, Gabriel Tejero, Jonas Lootvoet, Céline Péllisier, Gladys Munoz, Ciarán Condon, Peter Redder

The HtrA chaperone monitors sortase-assembled pilus biogenesis in Enterococcus faecalis

Cristina Colomer-Winter, Adeline M. H. Yong, Kelvin K. L. Chong, Mark Veleba, Pei Yi Choo, Iris Hanxing Gao, Artur Matysik, Foo Kiong Ho, Swaine L. Chen, Kimberly A. Kline

The budding yeast Fkh1 Forkhead associated (FHA) domain promotes a G1-chromatin state and the activity of chromosomal DNA replication origins

Timothy Hoggard, Erika Chacin, Allison J. Hollatz, Christoph F. Kurat, Catherine A. Fox

Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding

Yusaku Sugimura, Kaori Oikawa, Yu Sugihara, Hiroe Utsushi, Eiko Kanzaki, Kazue Ito, Yumiko Ogasawara, Tomoaki Fujioka, Hiroki Takagi, Motoki Shimizu, Hiroyuki Shimono, Ryohei Terauchi, Akira Abe

Candida albicans’ inorganic phosphate transport and evolutionary adaptation to phosphate scarcity

Maikel Acosta-Zaldívar, Wanjun Qi, Abhishek Mishra, Udita Roy, William R. King, Yuping Li, Jana Patton-Vogt, Matthew Z. Anderson, Julia R. Köhler

Comprehensive analysis of the functional impact of single nucleotide variants of human CHEK2

Claire E. McCarthy-Leo, George S. Brush, Roger Pique-Regi, Francesca Luca, Michael A. Tainsky, Russell L. Finley Jr

XOL-1 regulates developmental timing by modulating the H3K9 landscape in C. elegans early embryos

Eshna Jash, Anati Alyaa Azhar, Hector Mendoza, Zoey M. Tan, Halle Nicole Escher, Dalia S. Kaufman, Györgyi Csankovszki

An autoregulatory poison exon in Smndc1 is conserved across kingdoms and influences organism growth

Andrea E. Belleville, James D. Thomas, Jackson Tonnies, Austin M. Gabel, Andrea Borrero Rossi, Priti Singh, Christine Queitsch, Robert K. Bradley

Recent secondary contact, genome-wide admixture, and asymmetric introgression of neo-sex chromosomes between two Pacific island bird species

Elsie H. Shogren, Jason M. Sardell, Christina A. Muirhead, Emiliano Martí, Elizabeth A. Cooper, Robert G. Moyle, Daven C. Presgraves, J. Albert C. Uy

A conserved protein tyrosine phosphatase, PTPN-22, functions in diverse developmental processes in C. elegans

Shaonil Binti, Adison G. Linder, Philip T. Edeen, David S. Fay

Identification of a genetic region linked to tolerance to MRSA infection using Collaborative Cross mice

Aravindh Nagarajan, Kristin Scoggin, L. Garry Adams, David Threadgill, Helene Andrews-Polymenis

Pervasive tissue-, genetic background-, and allele-specific gene expression effects in Drosophila melanogaster

Amanda Glaser-Schmitt, Marion Lemoine, Martin Kaltenpoth, John Parsch

Voltage-gated calcium channels act upstream of adenylyl cyclase Ac78C to promote timely initiation of dendrite regeneration

J. Ian Hertzler, Jiajing Teng, Annabelle R. Bernard, Michelle C. Stone, Hannah L. Kline, Gibarni Mahata, Nitish Kumar, Melissa M. Rolls

Methods

Finemap-MiXeR: A variational Bayesian approach for genetic finemapping

Bayram Cevdet Akdeniz, Oleksandr Frei, Alexey Shadrin, Dmitry Vetrov, Dmitry Kropotov, Eivind Hovig, Ole A. Andreassen, Anders M. Dale