Moss genetics and the way forward

Neil Ashton

PLOS Genetics: published May 10, 2018 | https://doi.org/10.1371/journal.pgen.1007330

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A less selfish view of genome size evolution in maize

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PLOS Genetics: published May 10, 2018 | https://doi.org/10.1371/journal.pgen.1007249

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Outstanding questions in the study of archaic hominin admixture

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PLOS Genetics: published May 31, 2018 | https://doi.org/10.1371/journal.pgen.1007349

TPP riboswitch-dependent regulation of an ancient thiamin transporter in Candida

Paul D. Donovan, Linda M. Holland, Lisa Lombardi, Aisling Y. Coughlan, Desmond G. Higgins, Kenneth H. Wolfe, Geraldine Butler

PLOS Genetics: published May 31, 2018 | https://doi.org/10.1371/journal.pgen.1007429

New insights into donor directionality of mating-type switching in Schizosaccharomyces pombe

Takahisa Maki, Naoto Ogura, James E. Haber, Hiroshi Iwasaki, Geneviève Thon

PLOS Genetics: published May 31, 2018 | https://doi.org/10.1371/journal.pgen.1007424

Distinct domains of Escherichia coli IgaA connect envelope stress sensing and down-regulation of the Rcs phosphorelay across subcellular compartments

Nahla A. Hussein, Seung-Hyun Cho, Géraldine Laloux, Rania Siam, Jean-François Collet

PLOS Genetics: published May 31, 2018 | https://doi.org/10.1371/journal.pgen.1007398

Chromosome architecture constrains horizontal gene transfer in bacteria

Heather L. Hendrickson, Dominique Barbeau, Robin Ceschin, Jeffrey G. Lawrence

PLOS Genetics: published May 29, 2018 | https://doi.org/10.1371/journal.pgen.1007421

Differential strengths of molecular determinants guide environment specific mutational fates

Rohan Dandage, Rajesh Pandey, Gopal Jayaraj, Manish Rai, David Berger, Kausik Chakraborty

PLOS Genetics: published May 29, 2018 | https://doi.org/10.1371/journal.pgen.1007419

Spontaneous gain of susceptibility suggests a novel mechanism of resistance to hybrid dysgenesis in Drosophila virilis

Sergei Y. Funikov, Dina A. Kulikova, George S. Krasnov, Alexander P. Rezvykh, Lubov N. Chuvakova, Natalia G. Shostak, Elena S. Zelentsova, Justin P. Blumenstiel, Michael B. Evgen’ev

PLOS Genetics: published May 29, 2018 | https://doi.org/10.1371/journal.pgen.1007400

Auxin production in diploid microsporocytes is necessary and sufficient for early stages of pollen development

Xiaozhen Yao, Lei Tian, Jun Yang, Yan-Na Zhao, Ying-Xiu Zhu, Xinhua Dai, Yunde Zhao, Zhong-Nan Yang

PLOS Genetics: published May 29, 2018 | https://doi.org/10.1371/journal.pgen.1007397

Specific detection of fission yeast primary septum reveals septum and cleavage furrow ingression during early anaphase independent of mitosis completion

Juan Carlos G. Cortés, Mariona Ramos, Mami Konomi, Iris Barragán, M. Belén Moreno, María Alcaide-Gavilán, Sergio Moreno, Masako Osumi, Pilar Pérez, Juan Carlos Ribas

PLOS Genetics: published May 29, 2018 | https://doi.org/10.1371/journal.pgen.1007388

Nuclear m⁶A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development

Seth D. Kasowitz, Jun Ma, Stephen J. Anderson, N. Adrian Leu, Yang Xu, Brian D. Gregory, Richard M. Schultz, P. Jeremy Wang

PLOS Genetics: published May 25, 2018 | https://doi.org/10.1371/journal.pgen.1007412

Adaptive genome duplication affects patterns of molecular evolution in Saccharomyces cerevisiae

Kaitlin J. Fisher, Sean W. Buskirk, Ryan C. Vignogna, Daniel A. Marad, Gregory I. Lang

PLOS Genetics: published May 25, 2018 | https://doi.org/10.1371/journal.pgen.1007396

Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii

Jian Jiao, Meng Ni, Biliang Zhang, Ziding Zhang, J. Peter W. Young, Ting-Fung Chan, Wen Xin Chen, Hon-Ming Lam, Chang Fu Tian

PLOS Genetics: published May 24, 2018 | https://doi.org/10.1371/journal.pgen.1007428

Chromosome 1 licenses chromosome 2 replication in Vibrio cholerae by doubling the crtS gene dosage

Revathy Ramachandran, Peter N. Ciaccia, Tara A. Filsuf, Jyoti K. Jha, Dhruba K. Chattoraj

PLOS Genetics: published May 24, 2018 | https://doi.org/10.1371/journal.pgen.1007426

Yeast heterochromatin regulators Sir2 and Sir3 act directly at euchromatic DNA replication origins

Timothy A. Hoggard, FuJung Chang, Kelsey Rae Perry, Sandya Subramanian, Jessica Kenworthy, Julie Chueng, Erika Shor, Edel M. Hyland, Jef D. Boeke, Michael Weinreich, Catherine A. Fox

PLOS Genetics: published May 24, 2018 | https://doi.org/10.1371/journal.pgen.1007418

Ancestry-specific recent effective population size in the Americas

Sharon R. Browning, Brian L. Browning, Martha L. Daviglus, Ramon A. Durazo-Arvizu, Neil Schneiderman, Robert C. Kaplan, Cathy C. Laurie

PLOS Genetics: published May 24, 2018 | https://doi.org/10.1371/journal.pgen.1007385

Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population

Manuel A. Rivas, Brandon E. Avila, Jukka Koskela, Hailiang Huang, Christine Stevens, Matti Pirinen, Talin Haritunians, Benjamin M. Neale, Mitja Kurki, Andrea Ganna, Daniel Graham, Benjamin Glaser, Inga Peter, Gil Atzmon, Nir Barzilai, Adam P. Levine, Elena Schiff, Nikolas Pontikos, Ben Weisburd, Monkol Lek, Konrad J. Karczewski, Jonathan Bloom, Eric V. Minikel, Britt-Sabina Petersen, Laurent Beaugerie, Philippe Seksik, Jacques Cosnes, Stefan Schreiber, Bernd Bokemeyer, Johannes Bethge, International IBD Genetics Consortium, NIDDK IBD Genetics Consortium, T2D-GENES Consortium, Graham Heap, Tariq Ahmad, Vincent Plagnol, Anthony W. Segal, Stephan Targan, Dan Turner, Paivi Saavalainen, Martti Farkkila, Kimmo Kontula, Aarno Palotie, Steven R. Brant, Richard H. Duerr, Mark S. Silverberg, John D. Rioux, Rinse K. Weersma, Andre Franke, Luke Jostins, Carl A. Anderson, Jeffrey C. Barrett, Daniel G. MacArthur, Chaim Jalas, Harry Sokol, Ramnik J. Xavier, Ann Pulver, Judy H. Cho, Dermot P. B. McGovern, Mark J. Daly

PLOS Genetics: published May 24, 2018 | https://doi.org/10.1371/journal.pgen.1007329

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MOF influences meiotic expansion of H2AX phosphorylation and spermatogenesis in mice

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The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression

Mark Ravinet, Kohta Yoshida, Shuji Shigenobu, Atsushi Toyoda, Asao Fujiyama, Jun Kitano

PLOS Genetics: published May 23, 2018 | https://doi.org/10.1371/journal.pgen.1007358

Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens

Lyndal Henden, Stuart Lee, Ivo Mueller, Alyssa Barry, Melanie Bahlo

PLOS Genetics: published May 23, 2018 | https://doi.org/10.1371/journal.pgen.1007279

TGFβ signaling limits lineage plasticity in prostate cancer

Yi Hao, Glen A. Bjerke, Karolina Pietrzak, Tiffany A. Melhuish, Yu Han, Stephen D. Turner, Henry F. Frierson Jr, David Wotton

PLOS Genetics: published May 21, 2018 | https://doi.org/10.1371/journal.pgen.1007409

Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen

Darach Miller, Nathan Brandt, David Gresham

PLOS Genetics: published May 21, 2018 | https://doi.org/10.1371/journal.pgen.1007406

Evaluation and application of summary statistic imputation to discover new height-associated loci

Sina Rüeger, Aaron McDaid, Zoltán Kutalik

PLOS Genetics: published May 21, 2018 | https://doi.org/10.1371/journal.pgen.1007371

Elevated temperature increases meiotic crossover frequency via the interfering (Type I) pathway in Arabidopsis thaliana

Jennifer L. Modliszewski, Hongkuan Wang, Ashley R. Albright, Scott M. Lewis, Alexander R. Bennett, Jiyue Huang, Hong Ma, Yingxiang Wang, Gregory P. Copenhaver

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A homozygous KAT2B variant modulates the clinical phenotype of ADD3 deficiency in humans and flies

Sara Gonçalves, Julie Patat, Maria Clara Guida, Noelle Lachaussée, Christelle Arrondel, Martin Helmstädter, Olivia Boyer, Olivier Gribouval, Marie-Claire Gubler, Geraldine Mollet, Marlène Rio, Marina Charbit, Christine Bole-Feysot, Patrick Nitschke, Tobias B. Huber, Patricia G. Wheeler, Devon Haynes, Jane Juusola, Thierry Billette de Villemeur, Caroline Nava, Alexandra Afenjar, Boris Keren, Rolf Bodmer, Corinne Antignac, Matias Simons

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Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs

August Yue Huang, Xiaoxu Yang, Sheng Wang, Xianing Zheng, Qixi Wu, Adam Yongxin Ye, Liping Wei

PLOS Genetics: published May 15, 2018 | https://doi.org/10.1371/journal.pgen.1007395

Prickle is phosphorylated by Nemo and targeted for degradation to maintain Prickle/Spiny-legs isoform balance during planar cell polarity establishment

Giovanna M. Collu, Andreas Jenny, Konstantin Gaengel, Ivana Mirkovic, Mei-ling Chin, Ursula Weber, Michael J. Smith, Marek Mlodzik

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Defining ICR-Mo, an intrinsic colistin resistance determinant from Moraxella osloensis

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PLOS Genetics: published May 14, 2018 | https://doi.org/10.1371/journal.pgen.1007389

mTOR signaling regulates central and peripheral circadian clock function

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PLOS Genetics: published May 11, 2018 | https://doi.org/10.1371/journal.pgen.1007369

Population-specific genetic modification of Huntington's disease in Venezuela

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Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration

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PLOS Genetics: published May 10, 2018 | https://doi.org/10.1371/journal.pgen.1007383

Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein

Xinxin Ding, Leah M. Pervere, Carl Bascom Jr., Jeffrey P. Bibeau, Sakshi Khurana, Allison M. Butt, Robert G. Orr, Patrick J. Flaherty, Magdalena Bezanilla, Luis Vidali

PLOS Genetics: published May 10, 2018 | https://doi.org/10.1371/journal.pgen.1007221

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The receptor protein tyrosine phosphatase CLR-1 is required for synaptic partner recognition

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Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica

Nicole E. Wheeler, Paul P. Gardner, Lars Barquist

PLOS Genetics: published May 8, 2018 | https://doi.org/10.1371/journal.pgen.1007333

De novo and inherited private variants in MAP1B in periventricular nodular heterotopia

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Sustained activation of detoxification pathways promotes liver carcinogenesis in response to chronic bile acid-mediated damage

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LncRNA Jpx induces Xist expression in mice using both trans and cis mechanisms

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A coupled process of same- and opposite-sex mating generates polyploidy and genetic diversity in Candida tropicalis

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PLOS Genetics: published May 7, 2018 | https://doi.org/10.1371/journal.pgen.1007377

Dynamics and control of sister kinetochore behavior during the meiotic divisions in Drosophila spermatocytes

Soumya Chaurasia, Christian F. Lehner

PLOS Genetics: published May 7, 2018 | https://doi.org/10.1371/journal.pgen.1007372

RIT1 controls actin dynamics via complex formation with RAC1/CDC42 and PAK1

Uta Meyer zum Büschenfelde, Laura Isabel Brandenstein, Leonie von Elsner, Kristina Flato, Tess Holling, Martin Zenker, Georg Rosenberger, Kerstin Kutsche

PLOS Genetics: published May 7, 2018 | https://doi.org/10.1371/journal.pgen.1007370

Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo

Jenna E. Haines, Michael B. Eisen

PLOS Genetics: published May 4, 2018 | https://doi.org/10.1371/journal.pgen.1007367

Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution

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The ARE-binding protein Tristetraprolin (TTP) is a novel target and mediator of calcineurin tumor suppressing function in the skin

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Role of duplicate genes in determining the tissue-selectivity of hereditary diseases

Ruth Barshir, Idan Hekselman, Netta Shemesh, Moran Sharon, Lena Novack, Esti Yeger-Lotem

PLOS Genetics: published May 3, 2018 | https://doi.org/10.1371/journal.pgen.1007327

Human local adaptation of the TRPM8 cold receptor along a latitudinal cline

Felix M. Key, Muslihudeen A. Abdul-Aziz, Roger Mundry, Benjamin M. Peter, Aarthi Sekar, Mauro D’Amato, Megan Y. Dennis, Joshua M. Schmidt, Aida M. Andrés

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BRCA1 and BRCA2 tumor suppressors in neural crest cells are essential for craniofacial bone development

Kohei Kitami, Megumi Kitami, Masaru Kaku, Bin Wang, Yoshihiro Komatsu

PLOS Genetics: published May 2, 2018 | https://doi.org/10.1371/journal.pgen.1007340