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Mus caroli (Ryukyu mouse): 110308221
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Entry
110308221 CDS
T05910
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
110308221 (Scn9a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110308221 (Scn9a)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110308221 (Scn9a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQ
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
110308221
NCBI-ProteinID:
XP_021036295
Ensembl:
MGP_CAROLIEiJ_G0023607
UniProt:
A0A6P5QX27
LinkDB
All DBs
Position
2:complement(61097910..61250182)
Genome browser
AA seq
1984 aa
AA seq
DB search
MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKVHKDEKKDDEEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKTIFRFNATPALYMLSPFSPLRRISI
KILVHSLFSMLIMCTILTNCIFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKDLEQNETLESIMSTAESEEELK
RYFYYLEGSKDALLCGFSTDSGQCPEGYECVTAGRNPDYGYTSFDTFGWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRSRTMGLSESSSETSRLSSKSAKERRNRR
KKKKQKLSSGEEKGDDEKLSKSGSEESIRKKSFHLGVEGHHRAREKRLSTPNQSPLSIRG
SLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSSN
ISQASRSPPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTT
NQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTF
LIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLAVGNL
VFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINE
DCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVLN
LFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKGS
KDTNRTADPNNKKENYISNRTLAEISRDHNFLKEKDKISGFSSSLDKSFMDENDYQSFIH
NPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNRSSSSECSTVDNPLPGEEEAE
AEPINADEPEACFTDGCVRRFPCCQVNIDSGKGKVWWTIRKTCYRIVEHSWFESFIVLMI
LLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLD
FLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIM
NVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFPVSQVANRSECFALMNVSGNVRW
KNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNAQPIYEYSLYMYIYFVIFII
FGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN
KFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTDYMSYVLYWINVVFIILFTGEC
VLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFE
TFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVS
YIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCKL
SDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQ
MEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGDR
DDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVTKPDQEKYETDKTEKEDKEKD
ESRK
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgctgcctccgccaggacctcagagcttcgttcacttcacaaaacagtccctt
gccctcattgaacaacgcatttctgaagaaaaagccaaggttcacaaagatgaaaagaaa
gatgatgaggaagaaggtcccaagcccagtagtgacttggaagcaggtaaacagctaccc
ttcatctacggagacattcccccgggaatggtgtcagagcccctggaggacctggaccca
tactatgcagacaaaaaaacttttatagtattgaacaaagggaaaacaatcttccgtttc
aacgccacccctgctttatacatgctgtctcccttcagtcctctgagaagaatatctatt
aagattttagtgcactccttattcagcatgctaatcatgtgcacaattctgacaaactgc
atattcatgaccatgagcaaccctccagattggaccaaaaatgtagagtacacttttact
gggatatatacttttgaatcactcataaaaatccttgcaagaggcttttgcgtgggcgaa
ttcaccttcctccgtgacccttggaactggctggactttgttgtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgtaatcccaggactaaaaaccatcgtgggggccctgatccaa
tcagtgaagaagctctctgacgtcatgatcctcactgtgttctgtctcagtgtgttcgca
ctaattggactacaactgtttatgggcaacttgaagcataaatgcttccggaaggacctt
gagcagaacgaaacattagaaagcatcatgagtaccgctgagagtgaagaagaattgaaa
agatatttttattacttggagggatccaaagatgctcttctttgcggtttcagcacagat
tcagggcagtgtccagaagggtacgagtgtgtgacagctggcagaaacccagattatggc
tacacaagctttgacacattcggctgggccttcttggccttgtttcggctaatgactcag
gactactgggagaacctttatcaacagactctgcgtgctgctggcaaaacctacatgatt
ttctttgtcgtggtgatatttctgggatccttttacctgataaacttgatcctggctgtg
gtagccatggcgtacgaggaacagaaccaggccaacatcgaagaagctaaacagaaagag
ttagaatttcagcagatgttagaccgactcaaaaaagagcaggaagaagccgaggcgatc
gctgcagccgctgctgagtacacgagtttagggcggagcaggactatgggactctctgag
agctcttcagaaacctccaggctgagctcaaagagtgccaaggagagaagaaaccgaaga
aagaaaaaaaaacagaagctgtccagtggcgaggaaaagggtgacgatgagaagctgtcc
aagtcagggtcagaggaaagcatccgaaagaaaagcttccatctcggcgtggaagggcac
caccgggctcgggaaaagaggctgtccacccccaaccagtcaccactcagcattcgtggg
tccttgttttctgccaggcgcagcagcagaacaagtctcttcagttttaaggggcgagga
agagatctgggatctgaaacggaatttgctgatgatgagcatagcatttttggagataac
gagagcagaaggggttcattattcgtaccccatagaccccgggagcggcgcagcagtaac
atcagccaggccagtaggtccccaccagtgctgccggtgaacgggaagatgcacagtgca
gtggactgcaatggcgtggtgtcgcttgttgatggaccctcagccctcatgctccccaat
ggacagcttcttccagaggtgataatagataaggcaacttccgatgacagcggcacaact
aatcagatgcgtaaaaaaaggctctctagttcttactttttgtccgaggacatgctgaat
gacccacatctcaggcaaagggccatgagcagagcaagcattctaaccaacacagtagaa
gaacttgaagaatctagacaaaaatgtccaccatggtggtacagatttgctcacacattt
ttaatctggaattgttctccatattggataaaattcaaaaagttcatctattttattgta
atggatccctttgtagatcttgcaattaccatttgcatagttttaaacaccttgtttatg
gctatggagcaccatccaatgactgatgaattcaaaaatgtacttgcagtggggaacctg
gtcttcacagggatcttcgcagctgaaatggtactgaagttaatagccatggatccctat
gaatatttccaagtaggatggaatatttttgacagcctgattgtgacgttgagtttggta
gagcttttcctagcagatgtggaaggattatcagtcctgcggtcctttagattgctgcga
gtcttcaagttggcaaaatcctggcccacactgaatatgctcattaagatcatcggcaac
tcggtgggtgctctgggcaacctgaccctggtgctggccatcatcgtcttcatttttgct
gtggtcggcatgcagctgtttggaaagagctacaaggagtgtgtctgcaagatcaatgag
gactgcaagctgccgcgctggcacatgaacgacttcttccactcgttcctgatcgtgttc
cgcgtgctgtgtggggagtggatagagaccatgtgggactgcatggaggtcgcgggccag
accatgtgccttattgtttacatgatggtcatggtgattgggaaccttgtggtcctgaac
ctgtttctggctttattactgagttcctttagttctgacaatcttacagcaattgaagaa
gacaccgacgcaaacaacctccagattgcagtggccagaattaaaagagggatcaattat
gtgaagcagaccctgcgtgaattcattctaaagtcattttccaaaaagccaaagggctcc
aaggacacaaaccgaacagcggatcccaacaacaaaaaagaaaactatatctcaaaccgt
acccttgcagagataagcagagatcacaatttcctcaaagaaaaggataagatcagtggt
tttagcagcagtctagacaaaagctttatggatgaaaacgattaccagtcctttattcat
aatcccagcctcacagtgacagtgcccattgctcctggggagtctgatttggagaatatg
aacacagaagagcttagcagtgactcagatagtgactacagcaaagagagacggaaccga
tcaagttcttcagagtgcagcacagttgataaccctctgccaggagaagaggaggcagaa
gctgagcctatcaatgcagatgagcccgaagcctgttttacagatggctgtgtgcggaga
tttccatgctgccaagttaacatagactccgggaaagggaaagtttggtggaccatccgg
aagacctgctacaggatagtggagcacagctggtttgaaagcttcattgttctcatgatc
ctgctcagcagtggagctctggcttttgaggatatatatattgaaaagaaaaagaccatt
aagattatcctggagtatgctgacaagatattcacctacatcttcattctggaaatgctt
ctaaaatgggtggcatatgggtataaaacatatttcactaatgcctggtgttggctggac
ttcttaattgttgatgtgtctctagttactttagtagccaacactcttggctactcagac
cttggccccattaaatctctacggacactgagggccctaagacccctaagagctttgtct
agatttgaaggaatgagggtagtggtcaacgcactcataggagcaatcccttccatcatg
aatgtgcttcttgtgtgccttatattttggctaatattcagcatcatgggagtcaatctg
tttgctggcaagttctatgagtgtgttaacaccacagatggctcacgatttcctgtatct
caagttgcaaaccgttctgagtgttttgccctgatgaatgttagtggaaatgtgcgatgg
aaaaacctgaaagtaaacttcgataacgttgggcttggttacctgtctctgcttcaagtt
gcaacattcaagggatggatggatattatgtatgcagcagttgactctgttaatgtaaat
gcacaaccaatatatgaatacagcctctacatgtacatttattttgtcatcttcatcatc
tttggctcattcttcactttgaacttgttcattggtgtcatcatagataatttcaaccaa
cagaagaagaagcttggaggtcaagatatctttatgacagaagaacagaagaaatactat
aatgcaatgaagaagctggggtccaagaaaccacaaaaaccaattccgaggccagggaac
aaattccaaggatgcatatttgacttagtaacaaaccaagcttttgatattaccatcatg
gttcttatctgcctcaatatggtaaccatgatggtagaaaaggaggggcaaactgactac
atgagttatgtgctatactggatcaacgtggtcttcatcatcctgttcactggggagtgc
gtgctgaagctgatctctctcaggcattactacttcactgtgggatggaacatttttgat
tttgtggtagtgatcctctccattgtaggaatgtttctcgctgagatgatagagaagtat
ttcgtgtctcctaccctgttccgagtcatccgcctggccaggattggacgaatcctacgc
ctgatcaaaggtgccaaggggatccgcacgctgctctttgctctgatgatgtcccttcct
gcgctgttcaacattggcctcctgcttttcctcgtcatgttcatctacgccatctttggg
atgtccaactttgcctatgttaaaaaggaagctggaattaatgacatgttcaactttgag
acttttggcaacagcatgatctgcctgttccaaattaccacctctgcgggctgggatgga
ctgctggcccccattctcaacagtgcacctcctgactgtgacccaaaaaaggttcaccca
ggaagttcagtggaaggggactgtggaaatccatctgtgggaattttctactttgtcagc
tacatcatcatatccttcctggttgtggtgaacatgtacattgctgtcatcctggagaac
ttcagcgttgccacagaagaaagtactgagcccctgagtgaggacgactttgagatgttc
tacgaggtctgggagaagttcgaccctgacgccacccagttcatagagttctgcaagctc
tctgactttgcagcagccctggatcctcctctcctcatcgcaaagccaaacaaagtccag
ctcattgccatggacctgcctatggtgagtggagaccgcatccactgcctggacatctta
tttgcttttacaaagagggtcctgggcgagagcggagagatggattcccttcgttcacag
atggaagaaaggtttatgtcagccaatccttctaaagtgtcctatgagcccatcacaacc
acactgaagcgaaaacaagaggatgtatctgcgactatcattcagcgtgcttacagacgg
taccgccttaggcaaaacgtcaagaatatatcaagtatatatataaaagatggagacaga
gatgacgatttgcccaataaagaagatatagtttttgataatgttaacgagaactcaagt
ccagaaaagacagatgcaacagcctctaccatctctccaccttcctatgacagtgtcaca
aagccagatcaagagaaatatgaaacagacaaaacagagaaggaagacaaagagaaagac
gaaagcaggaaatag
DBGET
integrated database retrieval system
