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Mus pahari (shrew mouse): 110319361
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Entry
110319361 CDS
T05929
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
110319361 (Scn9a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mpah04040
]
110319361 (Scn9a)
Ion channels [BR:
mpah04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110319361 (Scn9a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
110319361
NCBI-ProteinID:
XP_021050513
Ensembl:
MGP_PahariEiJ_G0025058
LinkDB
All DBs
Position
3:complement(52663440..52813212)
Genome browser
AA seq
1984 aa
AA seq
DB search
MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKGHKDEKKDDEEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSPLRRISI
KILVHSLFSMLIMCTILTNCIFMTMSSPPEWTKNVEYTFTGIYTFESLIKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKDLEQNETLESIMNTAESEEELK
RYFYYLEGSKDALLCGFSTDSGQCPEGYECVTAGRNPDYGYTSFDTFGWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRGRIMGLSESSSETSRLSSKSAKERRNRR
KKKKQKMSSGEEKGDDEKLSKSGSEESIRKKSFHLGVEGHHWTREKRLSTPNQSPLSIRG
SLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSSN
ISQASRSPPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTT
NQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTF
LIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLAVGNL
VFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINE
DCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVLN
LFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKGS
KDTKRTVDPNNKKENYISNRTLAEISKDHNFLKEKDKISGFSSSLDKSFVDENDYQSFIH
NPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNRSSSSECSTVDNPLPGEEEAE
AEPINADEPEACFTDGCVRRFPCCQVNVDSGKGKVWWTIRKTCYRIVEHSWFESFIVLMI
LLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLD
FLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIM
NVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFSVSQVANRSECFALMNVSGNVRW
KNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNAQPIYEYSLYMYIYFVIFII
FGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN
KFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTEYMSYVLYWINVVFIILFTGEC
VLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFE
TFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVS
YIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCKL
SDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQ
MEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGDR
DDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVTKPDQEKYETDKTEKEDKEKD
ESRK
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgctgcctccgccaggacctcagagcttcgtccacttcacaaaacagtccctt
gccctcattgaacaacgcatttctgaagaaaaagccaagggacacaaagatgaaaagaaa
gatgatgaggaagaaggtcccaagcccagtagtgacttggaagctggtaaacagctaccc
ttcatctacggagacattcccccaggaatggtgtcagagcccctggaggacctggaccca
tactacgcagacaaaaaaacttttatagtattgaacaaagggaaagccatctttcgattc
aacgccacccctgctttgtacatgctgtctcccttcagtcctctgagaagaatatctatt
aagattttagtgcactctttattcagcatgctaatcatgtgcacaattctgacaaactgc
atattcatgaccatgagcagccctccagaatggaccaaaaatgtagagtacacttttact
gggatatatactttcgaatcactcataaaaatccttgcaagaggcttttgcgtgggcgaa
ttcaccttcctccgtgacccttggaactggctggactttgttgtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgtaatcccaggactaaagaccatcgtgggggccctgatccag
tcagtgaagaagctctctgacgtcatgatcctcactgtgttctgtctcagtgtgttcgca
ctaattggactacaattgtttatgggcaacttgaagcataaatgtttccggaaagacctt
gaacagaatgaaacattagaaagcatcatgaataccgctgaaagtgaagaagaattaaaa
agatatttttattacttggagggatccaaagatgctcttctttgtggtttcagcacagat
tcggggcagtgtccagaagggtacgagtgtgtgacggctggcagaaacccagattatggc
tacacaagctttgacacattcggctgggccttcttggccttgtttcggctaatgactcag
gactactgggagaacctttatcaacagactctgcgtgctgctggcaaaacctacatgatt
ttctttgtcgtggtgatatttctgggctccttttacctgataaacttgatcctggctgtg
gtggccatggcatacgaggaacagaaccaggccaacatcgaagaagctaaacagaaagag
ttagaatttcagcagatgttagaccgactcaaaaaagagcaggaagaagccgaggcgata
gctgcagcggctgctgagtacacgagtttagggcggggcaggattatgggactatctgag
agctcttcagaaacctccaggctgagctcaaagagtgccaaggagagaagaaaccgaaga
aagaaaaaaaagcagaagatgtccagtggagaggaaaagggtgacgatgagaagctgtcc
aagtcagggtcagaggaaagcatccgaaagaaaagcttccatctcggtgtggaagggcac
cactggacccgggaaaagaggctgtccacccccaaccagtcgccactcagcattcgcggg
tccttgttttctgcccggcgcagcagcaggacgagtctcttcagttttaaggggcgagga
agagatctgggatctgagacagaattcgctgatgacgagcatagcatttttggagacaac
gagagcagaaggggttcactattcgtaccccatagaccccgggagcggcgcagcagtaac
atcagccaggccagtaggtccccgccagtgctgccggtgaacgggaagatgcacagtgca
gtggactgcaatggtgtggtgtcgcttgttgatggaccctcagccctcatgctccccaat
ggacagcttcttccagaggtgataatagataaggcaacttccgacgacagcggcacaact
aatcagatgcgtaaaaaaaggctctctagttcttactttttgtctgaggacatgctgaat
gacccacatctcaggcaaagggcaatgagcagagcgagcattctaacaaacaccgtagaa
gaacttgaagaatccagacaaaaatgtccaccatggtggtacagatttgctcatacattt
ttaatctggaattgttctccatattggataaaattcaaaaagttcatctattttattgta
atggatccttttgtagatcttgcaattaccatttgcatagttttaaacaccttgtttatg
gctatggagcaccatccaatgactgatgaattcaaaaatgtacttgcagtggggaacctg
gtctttacggggatctttgcagctgaaatggtactgaagttaatagccatggatccctat
gaatatttccaagtagggtggaatatttttgacagtctgattgtgacgttgagtttggta
gagcttttcttagcggatgtggaaggattatcagtcctgcggtccttcagattgctgcga
gtcttcaagttggcaaagtcctggcccacactgaatatgcttattaagatcatcggcaac
tcggtgggcgcactgggcaacctgaccctggtgctggccatcatcgtcttcatttttgct
gtggtcggcatgcagctgtttggaaagagctacaaggagtgtgtctgcaagatcaacgaa
gactgcaagctgccacgctggcacatgcatgacttcttccactccttcctgattgtgttc
cgtgtgctgtgtggggagtggatagagaccatgtgggactgcatggaggttgcgggccag
accatgtgccttattgtttacatgatggtcatggtgattgggaaccttgtggtcctgaac
ctgtttctggctttattactgagttcctttagttctgacaatcttacagcaattgaagaa
gacaccgacgcaaacaacctccagatcgcagtggccagaattaaaagaggaatcaattat
gtgaaacagaccctgcgtgaattcattctgaagtcattttccaaaaagccgaagggctcc
aaggacacaaaacgaacagtggatcccaacaacaaaaaggaaaactatatctccaaccgg
acccttgcggagataagcaaagatcacaatttcctcaaagaaaaggataagatcagtggt
tttagcagcagcttagacaaaagcttcgtggatgaaaacgattaccagtcctttattcat
aatcccagcctcacagtgacagtgcccattgcccctggggaatcggatttggagaatatg
aacacggaagagcttagcagtgactcagatagtgactacagcaaagagagacggaaccga
tcaagttcttcagagtgcagcacagttgataaccctctgccaggagaagaggaggcagaa
gctgagcctatcaatgcagatgagcctgaagcctgttttacagatggctgtgtgcggaga
tttccatgctgccaagttaatgtagactccgggaaagggaaagtttggtggaccatccgg
aagacctgctacaggatcgtggagcacagctggtttgaaagcttcatcgttctcatgatc
ctgctcagcagcggagctctggcttttgaagatatatatattgaaaagaaaaagaccatt
aagattatcctggagtatgctgacaagatattcacctacatcttcattctggaaatgctt
ctaaaatgggtagcatatgggtataaaacatatttcactaatgcctggtgttggctggac
ttcttaattgttgatgtgtctctcgttactttagtagccaacactcttggctactcagac
cttggccccattaaatctctacggacactgagggccctaagacccctaagagctttgtct
agatttgaaggaatgagggtcgtggtcaacgcactcataggagccatcccttccatcatg
aatgtgcttcttgtgtgccttatattctggctaatatttagcatcatgggagtcaatctg
tttgctggcaagttctatgagtgtgttaacaccacagatggctcacgattttctgtatct
caagttgcaaaccgttctgagtgttttgccctgatgaatgttagtggaaatgtgcgatgg
aaaaacctgaaagtaaacttcgataacgttgggcttggttacctgtcactgcttcaagtt
gcaacgttcaagggatggatggatattatgtatgcagcagttgactctgttaatgtaaat
gcacaaccaatatatgaatacagcctctacatgtacatttattttgtcatcttcatcatc
tttggctcattcttcactttgaacttgttcattggtgtaatcatagataatttcaaccaa
cagaaaaagaagcttggaggtcaagatatctttatgacagaagaacagaagaaatactat
aatgcaatgaagaagctggggtccaagaaaccacaaaaaccaattccaaggccagggaac
aaattccaaggatgcatatttgacttagtgacgaaccaagcttttgatatcaccatcatg
gttcttatctgcctcaatatggtaaccatgatggtagaaaaggaagggcaaactgagtac
atgagttatgtgctctactggatcaacgtggtcttcatcatcctgttcactggggagtgt
gtgctgaagctgatctctctcaggcattactacttcactgtgggatggaacatttttgat
tttgtggtagtgatcctctccattgtaggaatgttccttgctgagatgatagagaagtat
ttcgtgtcccctaccctgttccgagtcatccgcctggccaggattggacgaatcctacgc
ctgatcaaaggcgccaaggggatccgcacgctgctctttgctctgatgatgtcccttcct
gcgctgttcaacatcggcctcctgcttttcctggtcatgttcatctacgccatctttggg
atgtccaactttgcctatgttaaaaaggaagctggaattaatgacatgttcaactttgag
acttttggcaacagcatgatctgcctgtttcaaatcaccacctctgcgggctgggatgga
ctgctggcccccattctcaacagtgcacctcctgattgtgacccaaaaaaggttcaccca
ggaagttcagtggaaggggactgtggaaatccatctgtgggaattttctactttgtcagc
tacattatcatatccttcctggttgtggtgaacatgtacattgctgtcatcctggagaac
ttcagcgttgccacagaagaaagtactgagcccctgagtgaggatgactttgagatgttc
tatgaggtctgggagaagtttgaccctgatgccacccagttcatagagttctgcaagctc
tctgactttgcagcagccctggatcctcccctccttatcgcaaagccaaacaaagtccag
ctcattgccatggacctgcccatggtgagtggagaccgtatccactgcctggacatctta
tttgcttttacaaaacgggtcctaggtgaaagtggagagatggattctcttcgttcacag
atggaagaaaggtttatgtcagccaatccatctaaagtgtcctatgaacccatcacaacc
acactgaagcgcaaacaagaggatgtatctgcgactatcattcagcgtgcttacagacgg
taccgccttaggcaaaatgtcaagaatatatcaagtatatatataaaagatggagacagg
gatgatgatttgcccaataaagaagatatagtttttgataatgttaacgagaactcaagt
ccagaaaagacagatgcaaccgcctctaccatctctccaccttcctatgacagtgtcaca
aagccagatcaagagaaatatgaaacagacaaaacagagaaggaagacaaagagaaagac
gaaagcaggaaatag
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integrated database retrieval system