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KEGG   Mus pahari (shrew mouse): 110319361
Entry
110319361         CDS       T05929                                 
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
  KO
K04841  voltage-gated sodium channel type IX alpha
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04742  Taste transduction
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09150 Organismal Systems
  09157 Sensory system
   04742 Taste transduction
    110319361 (Scn9a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:mpah04040]
    110319361 (Scn9a)
Ion channels [BR:mpah04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   110319361 (Scn9a)
SSDB
Motif
Pfam: Ion_trans Na_trans_cytopl Na_trans_assoc PKD_channel GPHH IQ Lustrin_cystein
Other DBs
NCBI-GeneID: 110319361
NCBI-ProteinID: XP_021050513
Ensembl: MGP_PahariEiJ_G0025058
LinkDB
Position
3:complement(52663440..52813212)
AA seq 1984 aa
MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKGHKDEKKDDEEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSPLRRISI
KILVHSLFSMLIMCTILTNCIFMTMSSPPEWTKNVEYTFTGIYTFESLIKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKDLEQNETLESIMNTAESEEELK
RYFYYLEGSKDALLCGFSTDSGQCPEGYECVTAGRNPDYGYTSFDTFGWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRGRIMGLSESSSETSRLSSKSAKERRNRR
KKKKQKMSSGEEKGDDEKLSKSGSEESIRKKSFHLGVEGHHWTREKRLSTPNQSPLSIRG
SLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSSN
ISQASRSPPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTT
NQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTF
LIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLAVGNL
VFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINE
DCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVLN
LFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKGS
KDTKRTVDPNNKKENYISNRTLAEISKDHNFLKEKDKISGFSSSLDKSFVDENDYQSFIH
NPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNRSSSSECSTVDNPLPGEEEAE
AEPINADEPEACFTDGCVRRFPCCQVNVDSGKGKVWWTIRKTCYRIVEHSWFESFIVLMI
LLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLD
FLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIM
NVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFSVSQVANRSECFALMNVSGNVRW
KNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNAQPIYEYSLYMYIYFVIFII
FGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN
KFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTEYMSYVLYWINVVFIILFTGEC
VLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFE
TFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVS
YIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCKL
SDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQ
MEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGDR
DDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVTKPDQEKYETDKTEKEDKEKD
ESRK
NT seq 5955 nt   +upstreamnt  +downstreamnt
atggcaatgctgcctccgccaggacctcagagcttcgtccacttcacaaaacagtccctt
gccctcattgaacaacgcatttctgaagaaaaagccaagggacacaaagatgaaaagaaa
gatgatgaggaagaaggtcccaagcccagtagtgacttggaagctggtaaacagctaccc
ttcatctacggagacattcccccaggaatggtgtcagagcccctggaggacctggaccca
tactacgcagacaaaaaaacttttatagtattgaacaaagggaaagccatctttcgattc
aacgccacccctgctttgtacatgctgtctcccttcagtcctctgagaagaatatctatt
aagattttagtgcactctttattcagcatgctaatcatgtgcacaattctgacaaactgc
atattcatgaccatgagcagccctccagaatggaccaaaaatgtagagtacacttttact
gggatatatactttcgaatcactcataaaaatccttgcaagaggcttttgcgtgggcgaa
ttcaccttcctccgtgacccttggaactggctggactttgttgtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgtaatcccaggactaaagaccatcgtgggggccctgatccag
tcagtgaagaagctctctgacgtcatgatcctcactgtgttctgtctcagtgtgttcgca
ctaattggactacaattgtttatgggcaacttgaagcataaatgtttccggaaagacctt
gaacagaatgaaacattagaaagcatcatgaataccgctgaaagtgaagaagaattaaaa
agatatttttattacttggagggatccaaagatgctcttctttgtggtttcagcacagat
tcggggcagtgtccagaagggtacgagtgtgtgacggctggcagaaacccagattatggc
tacacaagctttgacacattcggctgggccttcttggccttgtttcggctaatgactcag
gactactgggagaacctttatcaacagactctgcgtgctgctggcaaaacctacatgatt
ttctttgtcgtggtgatatttctgggctccttttacctgataaacttgatcctggctgtg
gtggccatggcatacgaggaacagaaccaggccaacatcgaagaagctaaacagaaagag
ttagaatttcagcagatgttagaccgactcaaaaaagagcaggaagaagccgaggcgata
gctgcagcggctgctgagtacacgagtttagggcggggcaggattatgggactatctgag
agctcttcagaaacctccaggctgagctcaaagagtgccaaggagagaagaaaccgaaga
aagaaaaaaaagcagaagatgtccagtggagaggaaaagggtgacgatgagaagctgtcc
aagtcagggtcagaggaaagcatccgaaagaaaagcttccatctcggtgtggaagggcac
cactggacccgggaaaagaggctgtccacccccaaccagtcgccactcagcattcgcggg
tccttgttttctgcccggcgcagcagcaggacgagtctcttcagttttaaggggcgagga
agagatctgggatctgagacagaattcgctgatgacgagcatagcatttttggagacaac
gagagcagaaggggttcactattcgtaccccatagaccccgggagcggcgcagcagtaac
atcagccaggccagtaggtccccgccagtgctgccggtgaacgggaagatgcacagtgca
gtggactgcaatggtgtggtgtcgcttgttgatggaccctcagccctcatgctccccaat
ggacagcttcttccagaggtgataatagataaggcaacttccgacgacagcggcacaact
aatcagatgcgtaaaaaaaggctctctagttcttactttttgtctgaggacatgctgaat
gacccacatctcaggcaaagggcaatgagcagagcgagcattctaacaaacaccgtagaa
gaacttgaagaatccagacaaaaatgtccaccatggtggtacagatttgctcatacattt
ttaatctggaattgttctccatattggataaaattcaaaaagttcatctattttattgta
atggatccttttgtagatcttgcaattaccatttgcatagttttaaacaccttgtttatg
gctatggagcaccatccaatgactgatgaattcaaaaatgtacttgcagtggggaacctg
gtctttacggggatctttgcagctgaaatggtactgaagttaatagccatggatccctat
gaatatttccaagtagggtggaatatttttgacagtctgattgtgacgttgagtttggta
gagcttttcttagcggatgtggaaggattatcagtcctgcggtccttcagattgctgcga
gtcttcaagttggcaaagtcctggcccacactgaatatgcttattaagatcatcggcaac
tcggtgggcgcactgggcaacctgaccctggtgctggccatcatcgtcttcatttttgct
gtggtcggcatgcagctgtttggaaagagctacaaggagtgtgtctgcaagatcaacgaa
gactgcaagctgccacgctggcacatgcatgacttcttccactccttcctgattgtgttc
cgtgtgctgtgtggggagtggatagagaccatgtgggactgcatggaggttgcgggccag
accatgtgccttattgtttacatgatggtcatggtgattgggaaccttgtggtcctgaac
ctgtttctggctttattactgagttcctttagttctgacaatcttacagcaattgaagaa
gacaccgacgcaaacaacctccagatcgcagtggccagaattaaaagaggaatcaattat
gtgaaacagaccctgcgtgaattcattctgaagtcattttccaaaaagccgaagggctcc
aaggacacaaaacgaacagtggatcccaacaacaaaaaggaaaactatatctccaaccgg
acccttgcggagataagcaaagatcacaatttcctcaaagaaaaggataagatcagtggt
tttagcagcagcttagacaaaagcttcgtggatgaaaacgattaccagtcctttattcat
aatcccagcctcacagtgacagtgcccattgcccctggggaatcggatttggagaatatg
aacacggaagagcttagcagtgactcagatagtgactacagcaaagagagacggaaccga
tcaagttcttcagagtgcagcacagttgataaccctctgccaggagaagaggaggcagaa
gctgagcctatcaatgcagatgagcctgaagcctgttttacagatggctgtgtgcggaga
tttccatgctgccaagttaatgtagactccgggaaagggaaagtttggtggaccatccgg
aagacctgctacaggatcgtggagcacagctggtttgaaagcttcatcgttctcatgatc
ctgctcagcagcggagctctggcttttgaagatatatatattgaaaagaaaaagaccatt
aagattatcctggagtatgctgacaagatattcacctacatcttcattctggaaatgctt
ctaaaatgggtagcatatgggtataaaacatatttcactaatgcctggtgttggctggac
ttcttaattgttgatgtgtctctcgttactttagtagccaacactcttggctactcagac
cttggccccattaaatctctacggacactgagggccctaagacccctaagagctttgtct
agatttgaaggaatgagggtcgtggtcaacgcactcataggagccatcccttccatcatg
aatgtgcttcttgtgtgccttatattctggctaatatttagcatcatgggagtcaatctg
tttgctggcaagttctatgagtgtgttaacaccacagatggctcacgattttctgtatct
caagttgcaaaccgttctgagtgttttgccctgatgaatgttagtggaaatgtgcgatgg
aaaaacctgaaagtaaacttcgataacgttgggcttggttacctgtcactgcttcaagtt
gcaacgttcaagggatggatggatattatgtatgcagcagttgactctgttaatgtaaat
gcacaaccaatatatgaatacagcctctacatgtacatttattttgtcatcttcatcatc
tttggctcattcttcactttgaacttgttcattggtgtaatcatagataatttcaaccaa
cagaaaaagaagcttggaggtcaagatatctttatgacagaagaacagaagaaatactat
aatgcaatgaagaagctggggtccaagaaaccacaaaaaccaattccaaggccagggaac
aaattccaaggatgcatatttgacttagtgacgaaccaagcttttgatatcaccatcatg
gttcttatctgcctcaatatggtaaccatgatggtagaaaaggaagggcaaactgagtac
atgagttatgtgctctactggatcaacgtggtcttcatcatcctgttcactggggagtgt
gtgctgaagctgatctctctcaggcattactacttcactgtgggatggaacatttttgat
tttgtggtagtgatcctctccattgtaggaatgttccttgctgagatgatagagaagtat
ttcgtgtcccctaccctgttccgagtcatccgcctggccaggattggacgaatcctacgc
ctgatcaaaggcgccaaggggatccgcacgctgctctttgctctgatgatgtcccttcct
gcgctgttcaacatcggcctcctgcttttcctggtcatgttcatctacgccatctttggg
atgtccaactttgcctatgttaaaaaggaagctggaattaatgacatgttcaactttgag
acttttggcaacagcatgatctgcctgtttcaaatcaccacctctgcgggctgggatgga
ctgctggcccccattctcaacagtgcacctcctgattgtgacccaaaaaaggttcaccca
ggaagttcagtggaaggggactgtggaaatccatctgtgggaattttctactttgtcagc
tacattatcatatccttcctggttgtggtgaacatgtacattgctgtcatcctggagaac
ttcagcgttgccacagaagaaagtactgagcccctgagtgaggatgactttgagatgttc
tatgaggtctgggagaagtttgaccctgatgccacccagttcatagagttctgcaagctc
tctgactttgcagcagccctggatcctcccctccttatcgcaaagccaaacaaagtccag
ctcattgccatggacctgcccatggtgagtggagaccgtatccactgcctggacatctta
tttgcttttacaaaacgggtcctaggtgaaagtggagagatggattctcttcgttcacag
atggaagaaaggtttatgtcagccaatccatctaaagtgtcctatgaacccatcacaacc
acactgaagcgcaaacaagaggatgtatctgcgactatcattcagcgtgcttacagacgg
taccgccttaggcaaaatgtcaagaatatatcaagtatatatataaaagatggagacagg
gatgatgatttgcccaataaagaagatatagtttttgataatgttaacgagaactcaagt
ccagaaaagacagatgcaaccgcctctaccatctctccaccttcctatgacagtgtcaca
aagccagatcaagagaaatatgaaacagacaaaacagagaaggaagacaaagagaaagac
gaaagcaggaaatag

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