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Sciurus carolinensis (gray squirrel): 124979773
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Entry
124979773 CDS
T08117
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
124979773
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124979773
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124979773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
ATP-synt_B
IQ
Lustrin_cystein
DUF6739
Motif
Other DBs
NCBI-GeneID:
124979773
NCBI-ProteinID:
XP_047400425
LinkDB
All DBs
Position
3:complement(116221728..116391421)
Genome browser
AA seq
1739 aa
AA seq
DB search
MILTVFCLSVFALIGLQLFMGNLRNKCFRTQLENNETLESIMKTYENEEDLKKYFYYLEG
SKDALLCGFSTDSGQCPEGYYCVKAGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQ
QTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKELEFQQMLD
RLKKEQEEAEAIAVAAAEYTSIGRSRIMGLSESSSETSRLSSKSAKERRNRRKKKNQKKL
SSGEEKGDDEKLSKSGSEESIRRKSVHLGVDGHRRAREKRLSTPNQSPLSIRGSLFSGRR
SSRTSLFSFKGRGKDIGSETEFADDEHSIFGDNESRRGSLFVPHRPQERRSSNISQASRS
PPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTTNQIHKKR
RSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTFLIWNCSP
YWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLTVGNLVFTGIFA
AEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLSDVEGLSVLRSFRLLRVFKLAKS
WPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINEDCTLPRW
HMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLNLFLALLL
SSFSSDNLTAIEEDTDANNLQIAVARIKKGINYVKQTLRELILKAFSKKPKLSREIRRAE
DLNGKKENYISNRTLAEMNKDHLFHKGKDKTSGFGSSMDKNLMEGSDCQSFIHNPSLTVT
VPIAPGESDLENMNTEELSSDSESDYSKERLNRSSSSECSTVDNPLPGEEEAEAEPVNSD
EPEACFTDGCVRRFPCCQVNTESGKGKIWWNIRKTCYRIVEHSWFESFIVLMILLSSGAL
AFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFLIVDVS
LVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCL
IFWLIFSIMGVNLFAGKFYECVNTTDGTRFPQTQVENRSECVALMNSSTNVRWKNLKVNF
DNVGLGYLSLLQVATFKGWMDIMYAAVDSVDVNKQPKYEYNLYMYMYFVIFIIFGSFFTL
NLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGCIF
DLVTNQVFDITIMVLICLNMVTMMVEKEGQSDYMIDVLYWINVVFIILFTGECVLKLISL
RHYYFTVGWNIFDFVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKG
IRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFETFGNSMI
CLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFL
VVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAAAL
DPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMS
ANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNK
EDIVFGNVNENSSPEKTDATPSTISPPSYDSVTKPDKEKYETDNTEKEDKGKDGKESKK
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgactgtgttctgccttagtgtgtttgctctgataggcctacagctcttcatg
ggcaatctgaggaataaatgtttccggacccaacttgaaaacaatgaaacattagaaagc
ataatgaaaacatatgagaatgaagaagacttgaaaaaatatttttattacttggaggga
tccaaagatgctctcctttgtggtttcagcacagattcaggtcagtgtccagaagggtac
tactgtgtgaaggctggcagaaaccctgattatggctacacaagctttgacactttcagt
tgggccttcttagccttatttcggctcatgacccaggattactgggaaaacctttaccaa
cagacactgcgtgctgctggcaaaacctacatgatcttctttgttgtggtgattttcctg
ggctccttttatctaataaacttgatcctggctgtggttgccatggcctatgaagaacag
aaccaagcaaacatcgaagaagcaaaacaaaaagagttagaatttcaacagatgttagat
cgcctcaaaaaagagcaagaagaagctgaggcaattgcagtggcagcagctgaatacaca
agtattgggcgaagcagaatcatgggactctcagagagttcttctgaaacatccagactg
agttcaaaaagtgctaaagagagaagaaacagaagaaagaaaaagaaccaaaagaagctt
tccagtggggaggaaaaaggagatgatgagaaattgtccaaatcaggatcagaggagagc
atcagaaggaaaagtgtccaccttggtgtggacgggcatagacgggcacgtgagaagaga
ttgtccacccctaatcagtcaccactcagcattcgtggctccttgttttctggaaggcgc
agcagcagaacaagtcttttcagtttcaagggtcgaggaaaagatataggatctgagact
gaatttgctgacgatgagcacagcatttttggagacaacgagagcagacggggctcactg
ttcgtgccccacaggccccaggagcgacgcagcagtaacatcagccaagccagtaggtcc
cccccagtgctgccggtgaacgggaagatgcacagtgccgtggactgcaatggtgtggtt
tccctggttgatggaccctcagccctcatgctccccaatggacagcttctgccagaggtg
ataatagataaggcaacttctgacgacagcggtacaactaatcaaatacacaaaaaaaga
cgttccagttcatatttcctttcagaggatatgctaaatgatccccatctaagacaaaga
gcaatgagtagagcaagcatattgaccaacactgtagaagaacttgaagagtccagacag
aaatgtccaccttggtggtacagatttgcgcacacatttttgatctggaattgctctccc
tattggataaaattcaaaaagtttatctattttattgtaatggatccttttgtagatctt
gcaattaccatttgcatagttttaaacacattatttatggctatggagcaccacccaatg
actgaagaattcaaaaatgtgctcactgtaggaaatttggtcttcactggaatttttgca
gctgaaatggttttaaaactaattgccatggatccatatgagtatttccaagtaggctgg
aatatttttgacagtcttattgtgactttaagtttggtagagctttttctatcagatgtg
gaaggattatcagttctacgatcattcagactgctccgtgtcttcaagctggcaaaatcc
tggcccacactgaatatgttaataaagatcattggcaattccgtgggggcgctgggaaac
ctcaccttggtgttggccatcatcgtcttcatttttgccgtggttggcatgcagctcttt
ggtaagagctacaaagaatgtgtctgcaagatcaatgaagactgcacgctcccacgctgg
cacatgaatgacttcttccactccttcctgatcgtgttccgcgtgctgtgtggagagtgg
atagagaccatgtgggattgtatggaggtcgctggtcaagccatgtgccttattgtttac
atgatggtcatggtaattggaaacctagtggttctgaacctatttctggctttattattg
agttcatttagttctgacaatcttacagcaattgaagaagacactgatgctaacaacctc
cagattgctgtggccagaattaaaaagggaataaattacgtgaaacagaccttgcgtgaa
ctcattttaaaagcattttccaaaaaaccaaagttgtccagggagataagacgagccgaa
gatctaaatggcaaaaaagaaaactatatctcaaaccgtacacttgctgaaatgaataaa
gatcacctcttccacaagggaaaagataaaaccagtggttttggaagcagcatggacaaa
aacttgatggaaggaagtgattgtcagtcatttattcataaccccagcctcacagtgaca
gtgccaattgcaccgggggaatctgatttggaaaatatgaatactgaggaacttagcagt
gattcggagagtgactacagcaaagagagattaaaccgatcgagttcctctgagtgcagc
acagttgataaccctctgccaggagaagaagaagctgaggccgaacctgtgaattcagat
gagccagaagcctgttttacagatggttgtgttcggagattcccatgctgccaagttaac
acagagtcagggaaaggaaaaatctggtggaacatcaggaaaacctgctatcgaatagtt
gaacatagttggtttgaaagcttcattgttcttatgatcctgctcagcagtggagctctg
gcttttgaagatatatatattgaaaagaaaaagaccattaagattattctggagtatgcg
gacaagatattcacctacatcttcattctggaaatgcttctaaaatgggtggcatatggt
tataagacatatttcaccaatgcctggtgttggctggatttcttaattgttgatgtttct
ttggttactttagttgcaaatactcttggctactcagatctcggccccattaaatctctt
cggacactgagagctttaagacctctaagagccttatcgaggtttgaaggaatgagggtg
gttgtgaatgcactcatcggagcaattccttccatcatgaacgtgcttcttgtgtgcctt
atcttctggctgatatttagcatcatgggagtaaatttgtttgctggcaagttctacgag
tgtgttaacactacagatgggacacggtttcctcaaacccaagtcgaaaatcgttctgag
tgtgttgccctgatgaatagtagcacaaacgtgaggtggaaaaacctgaaagtgaacttt
gacaatgttgggcttgggtacctgtctctgcttcaagttgccacattcaagggatggatg
gatatcatgtatgcagcagtcgattctgtcgatgtaaacaagcagcccaaatatgaatac
aacctctacatgtatatgtattttgtcatttttatcatctttgggtcattcttcactttg
aacttgttcattggtgtcatcatagataatttcaaccaacagaaaaagaagcttggaggt
caagacatctttatgacagaagaacagaagaaatactacaatgcaatgaaaaagctgggg
tccaagaaaccacaaaagccaattcctcgcccagggaacaaattccaaggatgtatattt
gacctagtaacaaaccaagtttttgatatcactatcatggttctgatctgccttaacatg
gtaaccatgatggtagaaaaagagggacaaagtgattacatgattgatgttttatattgg
ataaatgtggtttttattatccttttcactggagaatgtgtgctcaagctgatctccctc
agacattactacttcactgtaggatggaacatttttgattttgtggttgtgatcctttcc
attgtaggtatgtttcttgctgacctgatagaaaaatattttgtctcccctaccctgttc
cgagtgatccgtcttgccaggattggccgaatcctacgtctgatcaaaggggcaaagggg
atccgcacactgctctttgctttgatgatgtcccttcctgccttgtttaacattggtctc
ctgctcttcctggtcatgttcatctatgccatctttggaatgtccaacttcgcctatgtt
aagaaggaagcaggaattaatgacatgttcaactttgagacctttggtaacagcatgatc
tgtctgttccaaatcaccacctctgctggctgggatggattgctggcacctattctcaac
agtgccccgcctgactgtgatcccaaaaaagttcatccaggaagttcagttgaaggagat
tgtgggaacccctctgttgggattttctattttgtcagttacatcatcatatcctttctg
gtcgtggtgaacatgtatattgctgtcatcctggaaaacttcagtgttgctactgaagaa
agtactgagcccctgagtgaggatgactttgagatgttctatgaggtttgggagaagttt
gatcctgatgcaacccagtttatagaatatagcaaactctctgattttgcagctgccctg
gatcctcctcttctcatagcaaaaccaaacaaagtccaactcattgctatggacctgcca
atggtcagtggagaccggatccactgtcttgacattttatttgcttttacaaagcgtgtt
ttgggtgaaagtggagagatggattctcttcgttcacagatggaagaaaggttcatgtct
gcaaatccttctaaagtatcctatgaacccatcacaactacactgaaacgaaaacaagag
gatgtatctgctactatcattcagcgtgcttatagacgttaccgcttacggcaaaatgtc
aaaaatatatcaagcatatatataaaagatggagacagagatgatgacttgcccaataaa
gaagatatagtttttggtaatgttaatgagaactcaagtccagaaaaaacagatgcaacc
ccatccaccatctccccaccttcatatgatagtgtaacaaaaccagacaaagagaaatat
gaaacagacaacacagaaaaggaagacaaagggaaagatggcaaggaaagcaaaaaatag
DBGET
integrated database retrieval system
