Svoboda
|
Graniru
|
BBC Russia
|
Golosameriki
|
Facebook
Rattus norvegicus (rat): 25592
Help
Entry
25592 CDS
T01003
Symbol
Agrn
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04512
ECM-receptor interaction
rno04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
25592 (Agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
25592 (Agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rno00535
]
25592 (Agrn)
Proteoglycans [BR:
rno00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
25592 (Agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
CFAI_KAZAL
Laminin_EGF
EGF
SEA
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
25592
NCBI-ProteinID:
NP_786930
RGD:
2067
Ensembl:
ENSRNOG00000020205
UniProt:
P25304
Structure
PDB
LinkDB
All DBs
Position
5:complement(172031528..172064429)
Genome browser
AA seq
1940 aa
AA seq
DB search
MPPLPLEHRPRQEPGASMLVRYFMIPCNICLILLATSTLGFAVLLFLSNYKPGIHFTPAP
PTPPDVCRGMLCGFGAVCEPSVEDPGRASCVCKKNACPATVAPVCGSDASTYSNECELQR
AQCNQQRRIRLLRQGPCGSRDPCANVTCSFGSTCVPSADGQTASCLCPTTCFGAPDGTVC
GSDGVDYPSECQLLSHACASQEHIFKKFNGPCDPCQGSMSDLNHICRVNPRTRHPEMLLR
PENCPAQHTPICGDDGVTYENDCVMSRIGATRGLLLQKVRSGQCQTRDQCPETCQFNSVC
LSRRGRPHCSCDRVTCDGSYRPVCAQDGHTYNNDCWRQQAECRQQRAIPPKHQGPCDQTP
SPCHGVQCAFGAVCTVKNGKAECECQRVCSGIYDPVCGSDGVTYGSVCELESMACTLGRE
IQVARRGPCDPCGQCRFGSLCEVETGRCVCPSECVESAQPVCGSDGHTYASECELHVHAC
THQISLYVASAGHCQTCGEKVCTFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYLSACEL
REAACQQQVQIEEAHAGPCEPAECGSGGSGSGEDDECEQELCRQRGGIWDEDSEDGPCVC
DFSCQSVPRSPVCGSDGVTYGTECDLKKARCESQQELYVAAQGACRGPTLAPLLPVAFPH
CAQTPYGCCQDNFTAAQGVGLAGCPSTCHCNPHGSYSGTCDPATGQCSCRPGVGGLRCDR
CEPGFWNFRGIVTDGHSGCTPCSCDPRGAVRDDCEQMTGLCSCRPGVAGPKCGQCPDGQV
LGHLGCEADPMTPVTCVEIHCEFGASCVEKAGFAQCICPTLTCPEANSTKVCGSDGVTYG
NECQLKAIACRQRLDISTQSLGPCQESVTPGASPTSASMTTPRHILSKTLPFPHNSLPLS
PGSTTHDWPTPLPISPHTTVSIPRSTAWPVLTVPPTAAASDVTSLATSIFSESGSANGSG
DEELSGDEEASGGGSGGLEPPVGSIVVTHGPPIERASCYNSPLGCCSDGKTPSLDSEGSN
CPATKAFQGVLELEGVEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFW
SVRLRELGPGKLVRAIVDVHFDPTTAFQASDVGQALLRQIQVSRPWALAVRRPLQEHVRF
LDFDWFPTFFTGAATGTTAAMATARATTVSRLPASSVTPRVYPSHTSRPVGRTTAPPTTR
RPPTTATNMDRPRTPGHQQPSKSCDSQPCLHGGTCQDQDSGKGFTCSCTAGRGGSVCEKV
QPPSMPAFKGHSFLAFPTLRAYHTLRLALEFRALETEGLLLYNGNARGKDFLALALLDGR
VQFRFDTGSGPAVLTSLVPVEPGRWHRLELSRHWRQGTLSVDGETPVVGESPSGTDGLNL
DTNLYVGGIPEEQVAMVLDRTSVGVGLKGCIRMLDINNQQLELSDWQRAAVQSSGVGECG
DHPCLPNPCHGGALCQALEAGMFLCQCPPGRFGPTCADEKSPCQPNPCHGAAPCRVLSSG
GAKCECPLGRSGTFCQTVLETAGSRPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFL
ARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFCYDLGKGAAVIRSKEPIALGTWVRVFL
ERNGRKGALQVGDGPRVLGESPKSRKVPHTMLNLKEPLYIGGAPDFSKLARGAAVSSGFN
GVIQLVSLRGHQLLTQEHVLRAVDVSPFADHPCTQALGNPCLNGGSCVPREATYECLCPG
GFSGLHCEKGLVEKSVGDLETLAFDGRTYIEYLNAVIESEKALQSNHFELSLRTEATQGL
VLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGS
LQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHR
QLHLLEDAVTKPELRPCPTP
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctctgccactggaacacagacccaggcaggagcctggtgcctccatgctggtt
cgatacttcatgatcccctgcaacatctgcttgatcctgttggccacttccacattgggc
tttgcggttctgcttttcctcagcaactacaaacctggaatccacttcacaccagcgcct
cctacgcctcctgatgtatgcaggggaatgttatgtggctttggtgctgtgtgtgaacct
agtgttgaggatccaggccgtgcctcctgtgtgtgcaagaagaatgcttgccctgctacg
gtggctcctgtgtgtggctcagatgcctccacctatagcaacgagtgcgagctgcagcgc
gcgcagtgcaaccagcaacggcgcatccgcctgcttcgccaagggccatgtgggtcccgg
gacccctgtgccaacgtgacctgcagtttcggtagtacctgtgtaccttcggctgacgga
cagactgcctcatgtctgtgtcctacaacctgcttcggggcccctgatggcacagtgtgt
ggcagtgacggtgttgactaccctagtgaatgccagctgcttagtcatgcctgtgccagc
caggagcacatcttcaagaagttcaatggtccttgtgatccctgccagggcagcatgtca
gacctgaaccacatttgccgtgtgaacccacgtacacggcacccagaaatgcttctgcgg
cctgagaactgccctgcccagcacacgcctatctgtggagatgatggggtcacctatgaa
aacgactgtgtcatgagccgtataggtgcaacccgtggcctgcttctccagaaagtacgc
tctggtcaatgccaaactcgagaccagtgcccggagacctgccagtttaactccgtatgc
ctgtcccgccgtggccgtccccactgttcctgcgatcgtgtcacctgtgatgggtcttac
aggcctgtgtgtgcccaagatgggcacacatacaacaatgactgttggcgccaacaggct
gagtgtcgacaacagcgggccattcctcccaagcaccagggcccgtgtgaccagaccccg
tccccatgccatggagtgcaatgtgcatttggggcagtatgcacagtgaagaacgggaaa
gccgagtgtgagtgccagcgggtgtgctccggcatctacgatcctgtgtgcggcagtgac
ggtgtcacttacggcagtgtgtgcgagctggaatccatggcctgtacccttgggcgggaa
atccaagtggcccgcagaggaccctgtgacccatgtgggcagtgccgttttggatccctg
tgcgaggtggaaactggacgctgtgtgtgcccctctgagtgtgtggagtcagcccagccc
gtatgcggttctgatggacacacatacgctagtgaatgtgagctgcatgtccacgcctgt
acgcaccagatcagcctatacgtggcctcagctggacactgccagacctgtggagaaaaa
gtttgtacttttggggctgtgtgctcagctggacagtgtgtatgtccccgttgtgagcac
cctccacctggccctgtgtgtggcagtgatggtgtcacctacctcagtgcctgtgagcta
cgcgaagctgcctgtcagcagcaggtacaaattgaggaggcccatgcagggccatgtgag
ccggctgagtgtggctcagggggctctggttctggggaggacgacgagtgtgaacaggag
ctatgccggcagcgtggtggtatctgggacgaggactcagaagatgggccatgtgtctgt
gactttagctgccagagtgtccctagaagcccagtgtgtggctcggatggagtcacctat
ggcaccgagtgtgatctgaagaaggccaggtgcgaatcacagcaagaactgtacgttgct
gctcagggagcctgccgtggccctaccttggctccactgctacctgtggccttcccacac
tgtgcccaaaccccctatggctgctgccaggacaatttcactgctgcccagggtgtgggc
ttggctggctgtcccagcacctgccattgcaacccccatggctcctacagtggcacttgt
gacccagccacagggcagtgctcctgccgaccaggtgtaggaggcctcaggtgtgatcgc
tgtgaacctggcttctggaacttccgtggcatcgtcaccgatggacatagtggttgcact
ccctgcagctgcgaccctcggggtgccgtaagggatgactgtgaacagatgactggattg
tgttcctgtaggcctggtgtggctggtcccaagtgtggacagtgtccagatggtcaagtc
ctgggccatctaggctgtgaagcagatcccatgacacctgtgacttgtgtggagatacac
tgcgagttcggggcctcctgcgtagagaaggctggttttgcccaatgtatctgcccaacc
ctcacatgtccagaggctaactctaccaaggtctgcggatcagacggtgtgacatatggc
aatgaatgccagctgaaggccattgcctgccgccagcgtctggacatctccactcagagt
cttggtccctgccaggagagtgttactcctggggcttccccaacatctgcatctatgact
accccaaggcatatcctgagcaagacgctgccatttccccacaacagccttcctctgtct
cccggcagtactacccatgattggcccaccccattacccatatcacctcacaccacagtc
agcatccccagaagcaccgcgtggcctgtgctgaccgtgccccctacagcagcagcctct
gacgtaaccagtctcgcaacatcaatcttcagtgaatccggcagcgccaatgggagtggc
gacgaggaactgagtggagatgaggaggccagtgggggcgggtctgggggacttgagccc
ccggtgggcagcattgtggtgacccatgggccacccatcgagagggcttcctgctacaac
tcacctttgggctgctgctcagatggcaagacaccctcactggactccgaaggctccaac
tgtcctgctaccaaggcattccagggcgtgctggagcttgagggggtcgagggacaggaa
ctgttctacacacctgagatggctgaccccaagtcagagttgtttggggagaccgcaagg
agcattgaaagcacgctggacgacctgttccggaattcagacgtcaagaaggacttctgg
agtgtccgcctacgggaactggggcctggcaagttggtccgcgccattgtggacgttcac
tttgaccctaccacagccttccaggcatcagatgtgggtcaggccttgctccgacagatc
caggtatctaggccatgggccctggcagtgaggaggcctctgcaggaacatgtgcgattc
ttagactttgactggtttcccactttctttacgggagctgcaacaggaactacagctgct
atggccacagccagagccaccactgtgagccgactgccggcctcttccgtcaccccacga
gtctaccccagtcacaccagccggcctgttggcagaactacagcaccaccaaccactcgc
cggccaccaaccactgccaccaacatggaccggcctcggaccccaggccatcaacagccc
tcaaagtcctgtgattcccaaccttgcctccatggaggtacctgccaggaccaggattct
ggcaagggtttcacctgcagctgtactgcaggcaggggtggctctgtctgtgagaaagta
caacccccctccatgccagcttttaagggccactccttcttggccttccccaccctccga
gcctaccacacactgcgcctagcactggaattccgggctttggagacagagggactgcta
ctctacaatggcaatgcacgtggcaaagatttcctggctctggctctgttggatgggcgt
gtgcagttcaggtttgacacaggctcagggccagcagtgctaacgagcttagtgccagtg
gaaccaggacggtggcaccgcctcgagttgtcacggcattggcgtcagggcacactttct
gtggatggcgagactcctgttgtaggtgaaagtcccagtggcaccgatggcctcaacttg
gacacgaacctctatgtgggtggtatcccagaagaacaagttgccatggtgcttgatcgg
acctctgtgggcgttggcctgaaaggatgcattcgtatgctggatatcaacaatcagcag
ctggagcttagcgactggcagagggctgcggttcaaagctctggtgtgggagaatgtgga
gaccatccgtgcttacctaacccctgccatggtggggccctatgccaggcactggaggct
ggcatgttcctctgtcagtgcccgcctggccgctttggcccaacttgtgcagatgaaaag
agcccctgccagccgaacccctgccatggggcagccccctgtcgtgtgctttccagcggt
ggggccaagtgcgagtgccccctgggacgcagtggtaccttctgtcagacagtcctggag
actgctggctcccggcccttcctggctgactttaatggcttctcctacctggaactgaaa
ggcttgcacaccttcgagagagacctaggggagaagatggcgctggagatggtgttcttg
gctcgtgggcccagtggcttactcctctacaatgggcagaagacagatggcaagggggac
tttgtatccctggccctgcataaccggcacctagagttctgctatgaccttggcaagggg
gctgcagtcatcaggagcaaagagcccatagccctgggaacctgggtcagggtattcctg
gaacgaaatggccgcaagggtgcccttcaagtgggtgatggtccccgtgtgctaggggaa
tctccgaaatcccgcaaggttccgcacaccatgctcaacctcaaggagcctctctatatt
gggggagctcctgacttcagcaagctggccaggggggctgcagtgtcctctggcttcaat
ggtgtcatccagctggtgtctctaagaggccatcaactgctgactcaggagcatgtgttg
cgggcagtagatgtctcaccttttgcagaccacccttgtacccaggccttgggcaacccc
tgccttaatgggggctcgtgtgtcccgagggaagccacttatgaatgcctgtgtcctggg
ggcttctctgggctgcactgcgaaaaggggctagttgagaagtcagtgggggacctagaa
acactggcctttgatgggcggacctacatcgaatacctcaatgctgtgattgagagtgag
aaggcactgcagagcaaccactttgaactgagcttacgcactgaggccactcaggggctg
gtgctgtggattggcaaggctgcagaacgtgcagattacatggccctggccatcgtggac
gggcacctgcaactgagctatgacctaggttcccagccagttgtgctgcgctccactgtg
aaggtcaacaccaaccgctggcttcgaatcagggctcacagggagcacagggaaggttcc
cttcaggtgggcaatgaagcccctgtgactggatcttccccattgggtgccacgcaactg
gacacagatggagccctgtggcttggaggcctgcagaagcttcctgtggggcaggctcta
cccaaggcctatggcacaggttttgtgggctgtctgcgggacgtggtagtgggccatcgc
cagttgcatctgctggaggacgctgtcaccaaaccagagctaagaccctgccccactccc
tga
DBGET
integrated database retrieval system