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Sorghum bicolor (sorghum): 8085294
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Entry
8085294 CDS
T01086
Name
(RefSeq) nuclear pore complex protein NUP214
KO
K14317
nuclear pore complex protein Nup214
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8085294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8085294
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8085294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TACC_C
Motif
Other DBs
NCBI-GeneID:
8085294
NCBI-ProteinID:
XP_021321451
LinkDB
All DBs
Position
1:complement(73065501..73083033)
Genome browser
AA seq
1561 aa
AA seq
DB search
MGAPRELELSDEVEGEEDGTTDFVFRLAGDPIPLLPTDSNPLPLFDLLSPPARPLVVSDR
HATVFLAHPSGFIAVRTKELIEASKEAREKGKASTRCAQDCCVADVPLPGVSLIALSHDE
SVLAACTDTEIQFFSLASLLTHKDVVPSSSCSLGRVGTVKDFKWLNHASASYIVLSNGGL
LCHGSLGEGLKDVMENVDAVDCCKEGNHIAVARGNKLTILSPDFRETSSMSLLFQLWSDE
SDSEGTTIKVDSIGWVHGDSIVIGCVRLNEDDNEEGYLVQVIRTEESTFCESPGKPDVYT
YVDFFHGIMDDALPPGVGPNLLLGYLHRWDLMVASNKKSIDEHIALLKWPSAHDDEKTVT
YLEMLEDKYSPRIDLQENGDDNVILGFGVENVSLFQKITVTVGPEQKEVAPQHILLCLTG
EGKLAVYYLARISDPSDLPHATVSTNEDYDEKHISPATVSEKELTPSVTGSVSKSTLTEH
GAEPSSAQKGNSEAPQSLHGSPPSQQSMGKSHNSRTQVPADYSRNSKMGTRFDSAQDLSK
KFYSINEMTKGLDALLAYIEKDGGFRDACITFQQRPLSMFEDGLQNLLELLQVFKGKVEE
QCSKIEDLRNKVFQVSARQTYMKGIVSQSSDNQYWDIWNCQKLSPEFEVKRQIILKANQN
LTNQLVELERHFNNLEMNRSSETGRVASNRRAVYSNKTRSSQTQLSSVYNALNSQLAAAE
QLSECLSKQISVLNIGSPTRKQGAVTKELFESIGLAQTTDATKFSGSTPKPIKRFPSVNE
HSKGILGPSKSGEPETARRRRESLDMSLASLEPQKTTVKRIAPQQRLKISSDLPFRSNKK
IFDSQMAAISHEKSSGSSNSSMVESYVSRLRSLSEDVKEKPSGPQQNTLFKWVKESTGSS
QMSEQKHFELPGQMKSTAQSSKLTPSSPPSFSYTRMGAEDSINPSSVPSFGTKHTVSKPN
TLTFKTTITPKSNVHTEPNILPSITAAKTSQSPLSVKTTGESGDLPTLTMKNRQDSQSMP
SLGNIKGPGASLQNKGGIFGDLGKSSLTSEHSKPAVSHEKTDPLSGVGDAVQDTMKDTPK
MAPQPSALSPAPVTQTNSYSLRPTVSSSATSVSSGVKTSDVLSSSMQKVSPTVSVDTVSS
SIPTLAKDLSTGLSQNASKPETLISEVTSTIVSASSISVISTTESKYSVPPTTGASLPST
HVSVPKTAPTTSESVLTSTGKDVGPNTNTISTDEDDMEEEAPSASAELNLGALGGFSLGS
QPSSSPQKSNHFGASFGTSDNNSSGTPFTLTTSPGQLFRPASLSIPSAQPAQPSQSTSSS
SFSSSFSSGLTGFGQPAQIGSGQQSAFGKPAQIGAGQQAGFGQTAQIQSGFGQPAQIQSG
FGQSAQIGSGQQSGFGQPAQIGAVQSGFGQPAQFGAQQALGSVLGSFGQSRQLGGVGSGG
FGGFASASTSGGFGSLSSSNAGFAGPASGGGFSAPAASAGGGFAAAAAATGGGFAAPASK
SGGFAGAASSGGGFGGATQGGGFGSGGGFGSFGGNQGAGFSAFGASGTGRPPADFLTQMR
K
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgccgcgagagctcgagctctccgacgaggtggagggagaggaggacggcacc
accgacttcgtcttccgcctcgccggagaccctatcccgctcctcccgaccgattccaac
ccgctcccgctcttcgacctgctgtcccctcccgcgcgcccgctcgtcgtctccgaccgc
cacgccaccgtcttcctcgcccaccccagcgggtttatagctgtgaggacgaaggagttg
atcgaagccagcaaggaggcgcgcgagaagggaaaggcgagcacccgctgcgcgcaggac
tgctgcgtcgccgacgtgcccctccctggtgtatctctcattgcgctctcccatgatgag
tctgtgttagccgcctgcactgatactgagatccagttcttctcgttggcgtctctgctc
acacataaggatgtggtaccatcctcatcatgtagcctgggacgagttggcactgtgaaa
gatttcaagtggttaaatcatgcctctgcatcatatattgtactctcaaatggtgggttg
ctgtgtcatgggagtttgggtgaaggcctgaaggatgtgatggaaaatgtcgatgcagtt
gactgttgcaaggaaggaaatcatattgccgttgcaagagggaacaaacttaccatatta
tcaccagattttagggaaacatcctccatgtccctcttgttccagttgtggtctgatgaa
agtgattcagagggcactaccatcaaagtggattccattggctgggtacatggtgatagt
attgttattgggtgtgttcgattaaatgaagatgacaatgaagaaggatatcttgttcaa
gttataaggactgaagaaagcacattttgtgagagcccaggcaagccagatgtttatacc
tatgttgattttttccatggcattatggatgatgctttaccacccggagttggacctaat
ctacttttgggttatctgcatcgctgggatctcatggtggcttccaataaaaagagcatt
gatgaacacattgcccttctgaagtggccatccgcacatgatgatgaaaaaactgtaaca
tatcttgaaatgttggaggataaatacagtcctaggattgacttgcaagaaaatggcgat
gacaatgtcatactagggtttggtgttgagaatgtttcattatttcaaaagatcactgta
acagttggacctgaacaaaaggaggttgcccctcaacatattctactctgtttgactggt
gaaggcaaactagctgtatattacctcgccaggatttcagacccttctgatttacctcat
gctactgtgtctaccaatgaggactatgatgaaaaacatatttcacccgcaactgtatct
gaaaaggagttgactccaagtgttacaggttcagtatctaagagtactctcacagaacat
ggtgctgagccctcgagtgcacaaaaaggaaactctgaagcacctcaatcattgcatgga
tcacctccgtcacagcaatctatgggcaaatcacataacagcaggacacaagtaccagca
gactattctagaaactccaagatgggcacaagattcgattctgcacaagacttgtctaaa
aagttttacagtataaatgaaatgacgaaggggttagatgccctactagcgtatatagaa
aaggatggtggtttcagagatgcctgcataaccttccagcagcgtcctctttctatgttt
gaggatggcttgcaaaaccttttggagttgttgcaggtcttcaagggtaaagtagaggaa
caatgttcaaaaattgaagatctgaggaacaaggtgtttcaagtttctgctaggcaaact
tacatgaaaggaattgttagccagtcttcagataatcagtactgggatatatggaactgc
cagaaattgagtccagaattcgaagtgaagagacaaattatcctcaaagctaaccagaat
ttgacaaatcagctggtcgagttggagaggcacttcaataatctggagatgaacagatcc
agtgaaacaggaagagtggcttctaatcgaagagctgtttattctaataagacaaggtca
agtcagacacaattatccagtgtatataatgcactgaactcgcagttggcagctgctgag
cagctatctgaatgcctttcaaagcagatatctgtgttaaatattggttctcctactagg
aagcagggggcggtgaccaaagagttgtttgagtcaattggtttagcccaaacaactgat
gcaaccaaattttcaggcagcactcctaagccaattaagcggtttccatcggtgaatgag
cattcaaagggaatattagggccttccaagagtggtgagcctgagaccgctcgaaggagg
agagaatcactggatatgagcctggctagtttggaacctcagaaaacaactgttaaaaga
atagcaccgcaacaacgcctcaagatcagcagtgatctaccattcaggtcaaacaagaaa
atatttgattctcaaatggcagcaatatcacatgagaagtcaagcggtagctccaattca
tctatggtagaatcatatgtaagcagactgcgttctctgagtgaagatgtaaaagaaaaa
ccgtcaggaccccaacagaacactttgttcaaatgggtaaaggaatcaactgggtcatct
caaatgtcagagcaaaagcattttgagttaccagggcaaatgaaaagcactgcgcaatct
tcaaaattgacaccatcttcaccaccatcattcagttacacacgtatgggtgcagaagat
agtatcaacccatccagtgttccatcctttggaacaaaacatactgtatctaagccaaat
actctaaccttcaaaaccactataacccctaaaagtaatgtccacacagagccaaatata
ttaccttccataacagctgcaaaaacttctcagagtccactgtctgtgaaaactactggg
gagtctggagatttgcctacattaactatgaagaacagacaggatagtcagtcaatgcca
tctttggggaacataaaaggacctggtgcttctctgcagaacaagggtggcatattcgga
gatcttggcaaatcgtctttaacttctgaacattccaagcctgctgtatcacatgagaag
actgacccgctaagtggggttggcgatgctgtacaggacactatgaaagatacccccaaa
atggcacctcaaccttctgcattgtcaccagctcctgttactcagaccaattcatactcc
ttaaggccgactgtttcctcttcagccacatcagtctcatcaggtgtgaaaacttcggat
gttttatctagctcaatgcagaaagtttctccaacagtatctgtggatactgtgtctagt
tcaatccctactcttgctaaggatttgtcaactggcttgagtcaaaatgcttccaaacct
gaaacactaatatcagaggtaactagtaccatagtttctgcaagttcgatttcagtcata
tcgaccactgaaagcaaatattcagtgcctccaacaactggcgccagcttgccttctact
catgtctctgttcctaaaacagcaccaacaacatcagaatcagttcttacttccacagga
aaagatgtaggaccaaacactaacaccatctcaaccgatgaagacgatatggaagaggag
gcgccttctgcaagtgccgaactcaacttgggagcccttggtgggttcagcctcgggtcc
cagccttcttcaagtcctcaaaagtctaatcattttggtgcctcctttggtacatctgac
aataatagttcaggcacaccatttactttgacaaccagtccaggacagcttttccggccg
gcgtcgctaagcattccttcagctcagccagcccaaccatctcaatcaactagttctagt
tctttttctagttcgttctcaagcgggcttactggatttggacagcctgcacaaattgga
tctggccagcagtcagcatttgggaagcctgcacagattggagctggtcagcaggcagga
tttgggcagacagcacaaattcaatctggttttggtcagcctgcacaaattcaatctggt
tttggtcagtcagcacaaattggatctgggcaacagtcaggatttggccagcctgcacaa
attggggctgtccagtctggatttgggcagcctgcacagtttggtgctcaacaggcactt
ggatcagtgctgggttcttttggacaatcacgccagttaggaggcgtaggttctggagga
tttggtggatttgctagtgcttctacatctgggggttttggttctttatcttcaagtaat
gctggatttgctggtcctgcatcaggtgggggcttttcagcacctgctgcttctgcaggt
ggtggttttgctgctgctgctgctgctactggtggaggttttgctgctcctgcctccaaa
agtggtggttttgctggtgctgcttcatctggtggtggttttggaggtgccactcaggga
ggtggctttggcagtggtggtgggttcgggtcctttggtggtaaccaaggagctgggttc
tcggcatttggagcaagcggaactggaagaccgccggctgatttcttgacacagatgaga
aagtag
DBGET
integrated database retrieval system