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pparab peroxisome proliferator-activated receptor alpha b [ Electrophorus electricus (electric eel) ]

Gene ID: 113583566, updated on 18-Jun-2024

Summary

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Gene symbol
pparab
Gene description
peroxisome proliferator-activated receptor alpha b
See related
Ensembl:ENSEEEG00000017734
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
zebrafish all
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Genomic context

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See pparab in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 2 NC_049536.1 (9730271..9756962)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826288.1 (20282..42265)

Chromosome 2 - NC_049536.1Genomic Context describing neighboring genes Neighboring gene fibulin 1 Neighboring gene wingless-type MMTV integration site family, member 7Bb Neighboring gene cyclin dependent kinase inhibitor 1Bb Neighboring gene tyrosyl-tRNA synthetase 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor alpha b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049536.1 Reference fEleEle1.pri

    Range
    9730271..9756962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027019959.2 → XP_026875760.1  peroxisome proliferator-activated receptor alpha b

    UniProtKB/TrEMBL
    A0A4W4GIL7
    Conserved Domains (2) summary
    cd06932
    Location:200 → 466
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:100 → 183
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers

  2. XM_027019960.2 → XP_026875761.1  peroxisome proliferator-activated receptor alpha b

    UniProtKB/TrEMBL
    A0A4W4GIL7
    Related
    ENSEEEP00000037372.1, ENSEEET00000037808.2
    Conserved Domains (2) summary
    cd06932
    Location:200 → 466
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:100 → 183
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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