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Submitted SNP(ss) Details: ss8486958

Submitter
Handle	PGA-UW-FHCRC
Submitter SNP ID	ABO-017502
RefSNP(rs#)	rs8176704
Submitted Batch ID	ABO-AFRICAN-051603
Submitted Date	May 20, 2003
Publication Cited	[1] SeattleSNPs. NHLBI Program for Genomic Applications HL66682
First entry to dbSNP	May 20 2003 12:00:00:000AM

Resource Links
GenBank Accession	AY268591
Submitted Gene Name	ABO
Submitted Gene ID	28
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	44
Population	PGA-AFRICAN-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 2
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCTGTCATCT GAGACACCTA CCCAgggcct ctccctgggg cctgggctcc tgcttagctt
 ggttgggagg ctccaagacc aacatcccaa gaaagatgag acagaagcca gatcaccttt
 ttgggcctgg cttcagaagt cacccagcat cacttctgcT GCATTTATTT CTTAGAAACA
 CAGAATATCA GACCCCATCT CTTGATGGGA GGGGGCCTCA TGGTTTGTAG ACATGTTCTG
 AAACTCCACT CTGCC
 Y
 GGCCTTGGCT TCGACGTGTC TGGTGAATGT GTGGGCTGTG AGGCTCCCCG AACGTAGACC
 TCAGACTGCA ACGCTGGCCG TTACAGGGTC TGGCACACGG GCCCACGTCA GGCCCATCGC
 CACAGTGATG GTTGTTCTGT GACTGTTTCT GGTGGCCTCT GCTCCACACT CCAGGCTGAC
 GCTGTGCCCC TTCCACTGGG ACCCTCGGGT GGCTTCCATG CACTTGTGCC CTAAATCCTG
 CTCCTAGACT AAACT

Submitted Frequency for ss8486958

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGA-EUROPEAN-PANEL	44	C=0.84090900	T=0.15909100	0.268 +/-0.106			ABO-EUROPEAN-051603	PGA-UW-FHCRC
PGA-AFRICAN-PANEL	44	C=0.95454502	T=0.04545500	0.087 +/-0.081			ABO-AFRICAN-051603	PGA-UW-FHCRC

dbSNP summary of Genotypes for ss8486958

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGA-AFRICAN-PANEL	44	44	C=0.95454544	T=0.04545455	C/C=0.90909094 C/T=0.09090909	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
PGA-EUROPEAN-PANEL	44	44	C=0.84090906	T=0.15909091	C/C=0.77272725 C/T=0.13636364 T/T=0.09090909	Pr(chiSq=5.290,df=1) =0.025	Genotype Freq.

Submitted individual genotype for ss8486958

There is no individual genotype data for ss8486958.

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