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NSD3, a new SET domain-containing gene, maps to 8p12 and is amplified in human breast cancer cell lines

Genomics. 2001 May 15;74(1):79-88. doi: 10.1006/geno.2001.6524.

Abstract

We describe the isolation and characterization of NSD3, the third member of a gene family including Nsd1 and NSD2. Murine Nsd1 was isolated in a search for proteins that interact with the ligand-binding domain of retinoic acid receptor alpha. NSD2 (also known as WHSC1 and MMSET) is located in the Wolf-Hirschhorn syndrome (WHS) critical region on 4p16.3 and is involved in multiple myeloma with t(4;14) translocations. The proteins Nsd1, NSD2, and NSD3 are highly similar within a block of about 700 amino acids. This block contains several conserved domains, such as the SET domain and the PHD finger, present in proteins involved in development and/or chromatin reorganization. The NSD3 gene consists of an 8.5-kb transcript composed of 23 coding exons and spans >90 kb of genomic DNA. NSD3 maps to chromosome band 8p12 and is amplified in several tumor cell lines and primary breast carcinomas.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Binding Sites
  • Blotting, Northern
  • Breast Neoplasms / genetics*
  • Breast Neoplasms / pathology
  • Carrier Proteins / genetics*
  • Chromosome Mapping
  • Chromosomes, Human, Pair 8 / genetics*
  • Cloning, Molecular
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • Exons
  • Female
  • Gene Amplification
  • Gene Expression
  • Genes / genetics
  • Histone-Lysine N-Methyltransferase
  • Humans
  • In Situ Hybridization, Fluorescence
  • Introns
  • Molecular Sequence Data
  • Nuclear Proteins / genetics*
  • Poly A / genetics
  • Protein Isoforms / genetics
  • RNA / genetics
  • RNA / metabolism
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Tissue Distribution
  • Tumor Cells, Cultured

Substances

  • Carrier Proteins
  • DNA, Complementary
  • Nuclear Proteins
  • Protein Isoforms
  • Poly A
  • RNA
  • Histone-Lysine N-Methyltransferase
  • NSD3 protein, human

Associated data

  • GENBANK/AJ295990
  • GENBANK/AJ295991
  • GENBANK/AJ295992