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Quick Start

For a quick start, click on the following link (opens in new window):

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=p53

Come back to this page for further guidance and help.

Web Service Overview

The Europe PMC RESTful Web Service gives you access to over 33 million publications from various sources, including PubMed, Agricola, the European Patents Office (EPO) and the National Institute for Clinical Excellence (NICE). Use the Web Service to access

4.5 million full text articles and 1.8 million open access articles
Database cross-references to a number of databases, including UniProt, the European Nucleotide Archive (ENA) and more.
Reference lists for more than 12.5 million publications.
Citation counts and a citation network.
Text-mined terms from full text articles, including accession numbers, chemicals, diseases, genes and proteins, Gene Ontology terms, and organisms. Use the Annotations API to access annotations in abstracts and full text articles, with links to related database records.

For background information on Europe PMC content refer to the Web Service Reference Guide (Sections 2 and 3) and What am I searching on Europe PMC?

The search module can be used to query search fields. Refer to the fields module, the search syntax reference or the Web Service Reference Guide for a list of available fields.

Output response formats can be XML or JSON. In the case of the 'search' module a Dublin Core format is also available.

Web Service Releases

Two versions of the RESTful web service are simultaneously available. This approach to release management allows users to prepare for a new version, rather than having to immediately respond to a version change. Join the Europe PMC web service users' Google group to receive notifications about web service releases.

Construct your URL for a fields request as follows for the production version:

GET https://www.ebi.ac.uk/europepmc/webservices/rest/fields

Construct your URL for a fields request as follows for the test version of the web service:

GET https://www.ebi.ac.uk/europepmc/webservices/test/rest/fields

See the latest release notes.

Sorting Results

By default, the Europe PMC RESTful search results are sorted by relevance, with the most relevant result being presented first in the list.

The search module additionally provides a sort parameter available for every single-valued field, e.g. P_PDATE_D, AUTH_FIRST, CITED. The sort parameter can be combined with'asc' or 'desc' sort order.

RESTful search results can be sorted in two other ways using the arguments: 'sort_date:y' and 'sort_cited:y' in the 'query' parameter of the search module. For example:

Sort by the number of citations, most cited being the first result presented:

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=malaria%20sort_cited:y

Sort by date of publication, the most recently published article being the first result given:

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=malaria%20sort_date:y

Result Types

There are three options for the result type parameter which determine the fields returned, as follows:

idlist: returns a list of IDs and sources for the given search terms
lite: returns key metadata for the given search terms (default result type)
core: returns full metadata for a given publication ID; including abstract, full text links, and MeSH terms

Request Methods

Created by

Europe PMC

Apache License Version 2.0

Europe PMC Articles RESTful API

get /{source}/{id}/references

Use this module to retrieve a count and list of publications referenced in a given publication.

Parameters

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/29867326/references	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
page	Specify the section of the references list you wish to retrieve, where applicable. Page numbers start at 1; default value is 1.	query	integer
pageSize	Specify the number of references you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	query	integer
format	Format of the response. It can be either XML, JSON.	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /{id}/supplementaryFiles

Use this module to retrieve supplementary files where we have these for our full text. The files will automatically download in zip format. Note that all supplementary files can be retrieved with the exception of non-Open Access images.

- get /metrics
  Response Class (Status 200)
  
  string
  
  Response Content Type
  
  Hide Response
  
  Curl
  
  Request URL
  
  Response Body
  
  Response Code
  
  Response Headers

Parameter	Value	Description	Parameter Type	Data Type
id		All full text publications have external IDs starting 'PMC_', as with the following examples: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3258128/supplementaryFiles.	path	string
includeInlineImage		With this optional parameter all inline images can be excluded from the ZIP file. The default value is true.	query	string

post /searchPOST

Use this module to search our publication database. For more information on query syntax, search field combination and other curiosities, see the Europe PMC help page

Implementation Notes

This module must be used with the header Content-type:application/x-www-form-urlencoded.
This means that all the parameters must be passed in the request body in the url encoded form. Construct your POST search requests as follows:

POST https://www.ebi.ac.uk/europepmc/webservices/rest/searchPOST with request body query=cancer&resultType=core&pageSize=10

Parameters

Parameter	Value	Description	Parameter Type	Data Type
query	(empty)	User query. Possible options are: - a keyword or combination of keywords (e.g. HPV virus). - a phrase with enclosing speech marks (e.g. "human malaria"). - a fielded search (e.g. auth:stoehr). Available search fields are listed in the Appendix 1 of the Reference Guide or can be retrieved using the fields module of the API. - a specific publication (e.g. ext_id:781840 src:med). Specify ext_id as the article identifier, and src as the source database. List of the data sources can be found on the help pages or in section 3 of the Reference Guide.	formData	string
resultType		Response Type. This parameter determines the fields returned by XML and JSON formats, but it has no effect on the DC format. It can have the following values: idlist: returns a list of IDs and sources for the given search terms lite: returns key metadata for the given search terms core: returns full metadata for a given publication ID; including abstract, full text links, and MeSH terms	formData	string
synonym		Synonym searches are not made by default (default value = 'false'), however queries can be expanded using MeSH terminology. For example aspirin, a synonym would be acetylsalicylic acid; this could be included in the search by setting the parameter value to 'true'. The parameter value is case insensitive	formData	string
cursorMark	*	Specify the cursorMark for pagination of the result list. For the first request you can omit the parameter or leave the cursorMark empty or use the default value * (asterisk sign). For every following page use the value of the returned nextCursorMark element.	formData	string
pageSize	25	Specify the number of articles you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	formData	integer
sort	(empty)	The default sort order is relevance. Specify the sort field and sort order. This parameter provides "asc" or "desc" order for every single-valued field: P_PDATE_D, AUTH_FIRST, CITED etc. For example sorting by CITED in ascending order: CITED asc	formData	string
format		Format of the response. It can be either XML, JSON or DC (Dublin Core). See details here.	formData	string
callback	(empty)	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	formData	string
email	(empty)	This optional parameter registers the user's email address with EBI. The user can then be contacted about Web Service related news.	formData	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /{source}/{id}/citations

Use this module to retrieve a count and list of publications which cite a given publication.

Parameters

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/9843981/citations	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
page	Specify the section of the citations list you wish to retrieve, where applicable. Page numbers start at 1; default value is 1.	query	integer
pageSize	Specify the number of citations you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	query	integer
format	Format of the response. It can be either XML, JSON.	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /evaluations/{source}/{id}

Use this module to retrieve evaluations for a given publication.

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/evaluations/MED/29867326	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
format	Format of the response. It can be either XML, JSON.	query	string

get /{source}/{id}/databaseLinks

Use this module to retrieve a count and list of biological database records that have cited a given publication (cross references).

Parameters

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/30067176/databaseLinks	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
database	Specify the database you wish to retrieve links for. The default is to return links for all databases. It can be one of the values from the following list: ARXPR is a database of functional genomics experiments ChEBI is a database and ontology of chemical entities of biological interest ChEMBL is a database of bioactive drug-like small molecules EMBL (now ENA) provides a comprehensive record of the world's nucleotide sequencing information IntAct provides a freely available, open source database system and analysis tools for molecular interaction data InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites OMIM is a comprehensive and authoritative compendium of human genes and genetic phenotypes PDB (or PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures PRIDE (PRoteomics IDEntifications) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence UniProt provides a comprehensive and freely accessible resource of protein sequence and functional information	query	string
page	Specify the section of the database links list you wish to retrieve, where applicable. Page numbers start at 1; default value is 1.	query	integer
pageSize	Specify the number of database links you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	query	integer
format	Format of the response. It can be either XML, JSON.	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /{source}/{id}/labsLinks

This module gives access to the External Links provided by 3rd parties (to extend Europe PMC content). See the Europe PMC External Links Service page for more details. Use this module to return the External Links for a given source (src) and identifier (ext_id) combination, or by the external content provider (providerId).

Parameters

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/30067176/labsLinks	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
providerIds	Specify the provider(s) of the the External Links to retrieve	query	Array[integer]
page	Specify the section of the External Links list you wish to retrieve, where applicable. Page numbers start at 1; default value is 1.	query	integer
pageSize	Specify the number of External Links you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	query	integer
format	Format of the response. It can be either XML, JSON.	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /{id}/fullTextXML

Use this module to retrieve the full text in XML format for the Open Access subset of our full text publications.

Parameter	Value	Description	Parameter Type	Data Type
id		All full text publications have external IDs starting 'PMC_', like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3257301/fullTextXML	path	string

get /{id}/bookXML

Use this module to retrieve book XML formatted full text for the Open Access subset of the Europe PMC bookshelf.

Parameter	Value	Description	Parameter Type	Data Type
id		This method will return book XML that corresponds to either the book's metadata PubMed ID (https://www.ebi.ac.uk/europepmc/webservices/rest/10510270/bookXML), or the Europe PMC 'NBK' (https://www.ebi.ac.uk/europepmc/webservices/rest/NBK32884/bookXML). Note that only Open Access XML can be retrieved. Also note that the PMID and NBK identifiers are displayed on the Europe PMC front-end in a search results list	path	string

get /{source}/{id}/datalinks

Use this module to retrieve data-literature links of the API modules databaseLinks, labsLinks and textMinedTerms consolidated in one web service module and returns them in Scholix format.

Implementation Notes

Details about the Scholix format can be found here

Parameters

Parameter	Description	Parameter Type	Data Type
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/30067176/datalinks	path	string
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
category	Restrict the response to links of a certain category. In this context the category will always be the name of the resource hosting data linked to the publication in Europe PMC.	query	string
obtainedBy	Limit the response to links that were obtained through: Text mined accession numbers (tm_accession) Text mined terms (tm_term) External links (ext_links) Database links (submission)	query	string
fromDate	Limit the response to links that were updated on or after the date given in the format DD-MM-YYYY	query	string
tags	Limit the response to links tagged with the specific tags. When using several tags at once they are to be separated by comma. Possible values are : related_data: refers to data that is built on top of other data (e.g. IntAct protein interactions).supporting_data: refers to data hosted in databases that host primary data, i.e. data that is not built on top of other data (e.g. protein structures (PDBe) and nucleotide sequences (ENA)))plain_english: plain english content related to the linked publication (e.g. press releases, lay summaries).fulltext: datalinks to resources providing the fulltext publication.other: datalinks not captured by the other tags (e.g. training courses and peer reviews)	query	string
sectionLimit	Limit the number of links returned per section. Each "obtainedBy" process of each category is an individual section	query	string
email	This optional parameter registers the user's email address with EBI. The user can then be contacted about Web Service related news.	query	string
ref		query	string
format	Format of the response. It can be either XML or JSON.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

post /status-update-search

Use this module to search for article status update

Parameter	Value	Description	Parameter Type	Data Type
format		Format of the response. It can be either XML, JSON. See details here.	query	string
body	Parameter content type:	JSON request body containing all the input article ID(s)	body	Model Example Value ArticleStatusSearchRequest { ids (Array[ArticleInput]) } ArticleInput { src (string, optional), extId (string, optional) } `{ "ids": [ { "src": "string", "extId": "string" } ] }`

get /article/{source}/{id}

Use this module to search our publication database with a specific source and its id. It aslo accepts resultType, format, callback, debug and email query parameters.

Implementation Notes

Parameters

Parameter	Description	Parameter Type	Data Type
source	The source is a three letter code representing one of the data sources. It is returned as the source element by the search module. Further information on Europe PMC data sources can be found on the help page or in section 3 of the Reference Guide.	path	string
id	Publication identifier. It is returned as id element by the search module. Insert publication identifier into your URL along with the publication source, like the following example: https://www.ebi.ac.uk/europepmc/webservices/rest/article/MED/3426844/	path	string
resultType	Response Type. This parameter determines the fields returned by XML and JSON formats, but it has no effect on the DC format. It can have the following values: idlist: returns a list of IDs and sources for the given search terms lite: returns key metadata for the given search terms core: returns full metadata for a given publication ID; including abstract, full text links, and MeSH terms	query	string
format	Format of the response. It can be either XML, JSON or DC (Dublin Core). See details here	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string
email	This optional parameter registers the user's email address with EBI. The user can then be contacted about Web Service related news.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /fields

Use this module to see a full list of our indexed search fields, along with the datasets they can be used for.

Parameter	Value	Description	Parameter Type	Data Type
format		Format of the response. It can be either XML, JSON.	query	string
callback		Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string

get /profile

Use this module to obtain a 'profile' of hit counts from our database for various publication types and data sources.

Implementation Notes

This module adheres to the CORS standard of headers to enable javascript cross-domain search.
Construct your URL for profile requests as follows:

GET https://www.ebi.ac.uk/europepmc/webservices/rest/profile?query=parameters

Note that for this module, the user may specify either a slash symbol (/) or a question mark symbol (?) after the method name, and before the query.For example: profile?query=parameters or profile/query=parameters

Parameters

Parameter	Description	Parameter Type	Data Type
query	User query. Possible options are: - a keyword or combination of keywords (e.g. HPV virus). - a phrase with enclosing speech marks (e.g. "human malaria"). - a fielded search (e.g. auth:stoehr). Available search fields are listed in the Appendix 1 of the Reference Guide or can be retrieved using the fields module of the API. - a specific publication (e.g. ext_id:781840 src:med). Specify ext_id as the article identifier, and src as the source database. List of the data sources can be found on the help pages or in section 3 of the Reference Guide.	query	string
profiletype	The profile type can have one of the following values: pub_type: returns a profile of various publication types. source: returns a profile for the various data sources we obtain publications from. all: returns a profile for all of the above (default value).	query	string
synonym	Synonym searches are not made by default (default value = 'false'), however queries can be expanded using MeSH terminology. For example aspirin, a synonym would be acetylsalicylic acid; this could be included in the search by setting the parameter value to 'true'. The parameter value is case insensitive	query	string
format	Format of the response. It can be either XML, JSON.	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string
email	This optional parameter registers the user's email address with EBI. The user can then be contacted about Web Service related news.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

get /search

Use this module to search our publication database. For more information on query syntax, search field combination and other curiosities, see the Europe PMC help page

Implementation Notes

This module adheres to the CORS standard of headers to enable javascript cross-domain search.Construct your URL for search requests as follows:

GET https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=parameters

Note that for this module, the user may specify either a slash symbol (/) or a question mark symbol (?) after the method name, and before the query. For example:search?query=parameters or search/query=parameters

Parameters

Parameter	Description	Parameter Type	Data Type
query	User query. Possible options are: - a keyword or combination of keywords (e.g. HPV virus). - a phrase with enclosing speech marks (e.g. "human malaria"). - a fielded search (e.g. auth:stoehr). Available search fields are listed in the Appendix 1 of the Reference Guide or can be retrieved using the fields module of the API. - a specific publication (e.g. ext_id:781840 src:med) Specify ext_id as the article identifier, and src as the source database. List of the data sources can be found on the help pages or in section 3 of the Reference Guide.	query	string
resultType	Response Type. This parameter determines the fields returned by XML and JSON formats, but it has no effect on the DC format. It can have the following values: idlist: returns a list of IDs and sources for the given search terms lite: returns key metadata for the given search terms core: returns full metadata for a given publication ID; including abstract, full text links, and MeSH terms	query	string
synonym	Synonym searches are not made by default (default value = 'false'), however queries can be expanded using MeSH terminology. For example aspirin, a synonym would be acetylsalicylic acid; this could be included in the search by setting the parameter value to 'true'. The parameter value is case insensitive	query	string
cursorMark	Specify the cursorMark for pagination of the result list. For the first request you can omit the parameter or leave the cursorMark empty or use the default value * (asterisk sign). For every following page use the value of the returned nextCursorMark element.	query	string
pageSize	Specify the number of articles you wish to retrieve in each page. The default value is 25 when the parameter is not used. The maximum allowable number of results per page is 1000.	query	integer
sort	The default sort order is relevance. Specify the sort field and sort order. This parameter provides "asc" or "desc" order for every single-valued field: P_PDATE_D, AUTH_FIRST, FIRST_IDATE_D, CITED etc. For example sorting by CITED in ascending order: CITED asc	query	string
format	Format of the response. It can be either XML, JSON or DC (Dublin Core). See details here	query	string
callback	Use the callback parameter to make cross-domain requests and retrieve JSON data. The value is user specified. The web service wraps its response with the given callback value. Format value must be JSON.	query	string
email	This optional parameter registers the user's email address with EBI. The user can then be contacted about Web Service related news.	query	string

Response Messages

HTTP Status Code

Reason

Response Model

Headers

default

successful operation

Format

The format can either be XML, JSON or DC (Dublin Core); the default value is XML if the parameter is unspecified. XML returns the same response as the SOAP web service; see the Web Service Reference Guide.

DC returns the following Dublin Core metadata fields, within an RDF/XML wrapper: dc:contributor, dc:creator, dc:date, dc:description, dc:identifier, dc:language, dc:subject, dc:title, dc:type, dcterms:abstract, dcterms:accessRights, dcterms:bibliographicCitation, dcterms:isPartOf, dcterms:isVersionOf.

The use of these fields complies with the DCMI Metadata Terms recommendation documentation. Additionally, it should be noted that dc:contributor fields are used for the organisations to which some, or all of the authors listed in the dc:creator fields are affiliated. dc:description contains the publication types of the record (e.g. "Journal Article", "Book", etc.) dcterms:accessRights is only included for works in the Open Access subset of the PMC collection. There are two dcterms:bibliographicCitation fields for each journal article record, one which matches the "Text (citation)" option in the export feature on the Europe PMC web site, the other a machine-readable format using the syntax of the OpenURL standard. Other publication types (e.g. books, patents) only contain a single, non-machine-readable dcterms:bibliographicCitation.

Publication dates have been mapped as follows: dc:date - first publication date (the date of first publication, whichever is first, electronic or print publication; where a date is not fully available e.g. year only, an algorithm is applied to determine the value), dc:terms:available - electronic publication date, dc:terms:created - print publication date.

Note that the ‘resulttype’ parameter associated with the DC response is always set to ‘core’.

Example:

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=malaria&format=xml
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=malaria&format=json
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=malaria&format=dc

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Search life-sciences literature (43,939,518 articles, preprints and more)

Articles RESTful API

RESTful Web Service

Quick Start

Web Service Overview

Web Service Releases

Sorting Results

Result Types

Request Methods

Parameters

Response Messages

Curl

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Curl

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