Search Results (30)

Malus baccata, a valuable germplasm resource in the genus Malus, is indigenous to China and widely distributed. However, little is known about the lineage composition and genetic basis of ‘ZA’, a mutant type of M. baccata. In this study, we compared the differences between ‘ZA’ and wild type from the perspective of morphology and ultrastructure and analyzed their chloroplast pigment content based on biochemical methods. Further, the complete mitogenome of M. baccata ‘ZA’ was assembled and obtained by next-generation sequencing. Subsequently, its molecular characteristics were analyzed using Geneious, MISA-web, and CodonW toolkits. Furthermore, by examining 106 Malus germplasms and 42 Rosaceae species, we deduced and elucidated the evolutionary position of M. baccata ‘ZA’, as well as interspecific variations among different individuals. In comparison, the total length of the ‘ZA’ mitogenome (GC content: 45.4%) is 374,023 bp, which is approximately 2.33 times larger than the size (160,202 bp) of the plastome (GC: 36.5%). The collinear analysis results revealed abundant repeats and genome rearrangements occurring between different Malus species. Additionally, we identified 14 plastid-driven fragment transfer events. A total of 54 genes have been annotated in the ‘ZA’ mitogenome, including 35 protein-coding genes, 16 tRNAs, and three rRNAs. By calculating nucleotide polymorphisms and selection pressure for 24 shared core mitochondrial CDSs from 42 Rosaceae species (including ‘ZA’), we observed that the nad3 gene exhibited minimal variation, while nad4L appeared to be evolving rapidly. Population genetics analysis detected a total of 1578 high-quality variants (1424 SNPs, 60 insertions, and 94 deletions; variation rate: 1/237) among samples from 106 Malus individuals. Furthermore, by constructing phylogenetic trees based on both Malus and Rosaceae taxa datasets, it was preliminarily demonstrated that ‘ZA’ is closely related to M. baccata, M. sieversii, and other proximate species in terms of evolution. The sequencing data obtained in this study, along with our findings, contribute to expanding the mitogenomic resources available for Rosaceae research. They also hold reference significance for molecular identification studies as well as conservation and breeding efforts focused on excellent germplasms. Full article

Apple is an important horticultural crop, but various adverse environmental factors can threaten the quality and yield of its fruits. The ability of apples to resist stress mainly depends on the rootstock. Malus baccata (L.) Borkh. is a commonly used rootstock in Northeast China. In this study, it was used as the experimental material, and the target gene MbWRKY53 was screened through transcriptome analysis and Real-Time Quantitative Reverse Transcription Polymerase Chain Reaction (RT-qPCR) after cold and drought treatment. Bioinformatics analysis revealed that this transcription factor (TF) belonged to the WRKY TF family, and its encoded protein was localized in the nucleus. RT-qPCR showed that the gene was more easily expressed in roots and young leaves and is more responsive to cold and drought stimuli. Functional validation in Arabidopsis thaliana confirmed that MbWRKY53 can enhance plant tolerance to cold and drought stress. Furthermore, by analyzing the expression levels of genes related to cold and drought stress in transgenic Arabidopsis lines, it was inferred that this gene can regulate the expression of stress-related genes through multiple pathways such as the CBF pathway, SOS pathway, Pro synthesis pathway, and ABA-dependent pathways, enhancing the adaptability of transgenic Arabidopsis to cold and drought environments. Full article

Wood can store carbon and help mitigate global climate change. Carbon density (CD), the basis for measuring and analyzing C storage, is the product of wood density (WD) and C concentration, which are dependent on wood structure, cellulose concentration (CC), hemicellulose concentration (HC), and lignin concentration (LC). However, little attention has been paid to the C concentration of cellulose, hemicellulose, and lignin, which are fundamental factors in C storage and affect the credibility of accurate CD estimates. In order to disentangle the CD drives, WD, C concentration, CC, HC, and LC of the branch, stem, and root were quantified for five Rosaceae species from temperate forests in Northeastern China. The species were Sorbus alnifolia (Sieb.et Zucc.) K. Koch, Pyrus ussuriensis Maxim., Malus baccata (L.) Borkh., Crataegus pinnatifida var. major N. E. Brown, and Padus racemosa (Linn.) Gilib. The WD, CC, HC, and LC differed among species and tree organs, with the highest variability for the HC. The structural carbon concentration (SCC) was lower than the organic carbon concentration (OCC) and even the Intergovernmental Panel on Climate Change (IPCC) default value of 45%, with a maximum deviation of 2.6%. CD differed dramatically among species and tree organs. Based on SCC calculations, the highest CD was found in Sorbus alnifolia root (0.27 × 10⁶ g/m³), while the lowest was found in Padus racemosa branch (0.22 × 10⁶ g/m³). The results suggest that when estimating CD accurately at species level, it is important to consider not only WD but also structural carbohydrates and lignin concentration, providing important information on C fluxes and long-term C sequestration for forests. The study findings provide valuable insights into CD variations among tree species and organs and are valuable for forest management and policy development to improve carbon sequestration. Full article

Rainfall-runoff nitrogen (N) pollution has emerged as the primary source of water contamination due to rapid urbanization. Green infrastructure (GI), as the representative measure, is widely used in controlling N pollution in runoff. However, there is limited research on the impact of woody plants on N reduction in GIs. Therefore, this study aimed to investigate the influence and relationship of Sophora japonica (with tap root) and Malus baccata (with fibrous root) on N removal in GIs. Utilizing the advanced root analysis software WinRHIZO (version 4.0b), a meticulous examination of the morphological traits of plant roots was conducted. The findings unveiled a striking contrast between the root systems of two species: S. japonica primarily boasts a vertically oriented root configuration, whereas M. baccata’s root system is characterized by an extensively lateral, or horizontal, growth pattern. Specifically, in comparison to S. japonica, the horizontal roots of M. baccata demonstrated a substantial superiority, with their total root length measuring 10.95 times longer, the surface area spanning 6.25 times wider, and the cumulative volume being 3.93 times greater. For comparing the load reduction rates on runoff NH₃-N, NO₃-N, and TN of the different root morphologies’ GIs, S. japonica GI had the highest purification effect on the three pollutants, and the average load reduction rates of three pollutants reached 67.74%, 33.83%, and 38.96%, respectively, which were 11.42%, 27.46%, and 6.16% higher than those of the control. The variance contribution rate of vertical root and horizontal root characteristics on runoff nitrogen load reduction accounted for 86.47% of the total root contribution rate. The volume of vertical roots emerged as the most crucial characteristic factor affecting the reduction of N load. Full article

The effects of NaCl-induced salinity on biomass allocation, anatomical characteristics of leaves, ion accumulation, salt repellency, and salt secretion ability were investigated in two apple rootstock cultivars (Malus halliana ‘9-1-6’ and Malus baccata), which revealed the physiological adaptive mechanisms of M. halliana ‘9-1-6’ in response to salt stress factors. This experiment was conducted in a greenhouse using a nutrient solution pot. Salt stress was simulated by treating the plants with a 100 mM NaCl solution, while 1/2 Hoagland nutrient solution was used as a control (CK) instead of the NaCl solution. The results showed that the two rootstocks responded to salt environments by increasing the proportion of root biomass allocation. According to the stress susceptibility index, ‘9-1-6’ exhibits a lower salt sensitivity index and a higher salt tolerance index. The thickness of the leaf, upper and lower epidermis, palisade tissue, and mesophyll tissue compactness (CTR) of the two rootstocks were significantly decreased, while the thickness of sponge tissue and mesophyll tissue looseness (SR) were significantly increased, and the range of ‘9-1-6’ was smaller than that of M. baccata. With an extension of stress time, the accumulation of Na⁺ increased significantly, and the accumulation of K⁺ decreased gradually. The stem and leaves of ‘9-1-6’ showed a lower accumulation of Na⁺ and a higher accumulation of K⁺, and the roots displayed a higher ability to reject Na⁺, as well as young and old leaves showed a stronger ability to secrete Na⁺. In conclusion, within a certain salt concentration range, the ‘9-1-6’ root part can maintain lower salt sensitivity and a higher root-to-shoot ratio by increasing the proportion of root biomass allocation; the aerial part responds to salt stress through thicker leaves and a complete double-layer fence structure; the roots and stem bases can effectively reduce the transportation of Na⁺ to the aerial parts, as well as effectively secrete Na⁺ from the aerial parts through young and old leaves, thereby maintaining a higher K⁺/Na⁺ ratio in the aerial parts, showing a strong salt tolerance. Full article

A comprehensive comparative analysis of the carbohydrate composition (soluble sugars and pectins) of fruit tissues of Malus baccata, Malus mandshurica, Malus chamardabanica, and Malus sachalinensis, characteristic of the vast territory of Eastern Siberia and the Far East, was carried out. It was shown that a large part of the soluble carbohydrates of the studied species were represented by transport sugars—sorbitol and sucrose. These compounds also provided the main variability in the carbohydrate composition of fruits in the studied material. The polymers pectins and protopectins isolated from the studied fruits were highly methoxylated (up to 60–70%), and their content averaged about 6% of dry weight. The greatest length of pectin polymers was found in the fruit tissues of M. chamardabanica and M. sachalinensis. Data on elemental analysis of fractions of pectins and protopectins of all studied species showed the absence of potentially toxic concentrations of heavy metals. Of note is the rather high content of calcium in both polymer fractions of the four studied species, while its content in protopectin is significantly higher. In addition, in all cases, the presence of low-molecular-weight oligosaccharide molecules with a low-dispersed linear structure was revealed in the tissues of the fruits. It is worth noting that the high content of ascorbic acid was observed in the fruits of all studied species. In addition to being of fundamental interest, information about the carbohydrate composition of the wild Malus species can be useful for apple breeding when choosing sources of genes underlying useful traits. Full article

The primary determinants of apple (Malus) tree architecture include plant height and internode length, which are the significant criteria for evaluating apple dwarf rootstocks. Plant height and internode length are predominantly governed by phytohormones. In this study, we aimed to assess the mechanisms underlying dwarfism in a mutant of Malus baccata. M. baccata dwarf mutant (Dwf) was previously obtained through natural mutation. It has considerably reduced plant height and internode length. A comparative transcriptome analysis of wild-type (WT) and Dwf mutant was performed to identify and annotate the differentially expressed genes responsible for the Dwf phenotype using RNA-seq and GO and KEGG pathway enrichment analyses. Multiple DEGs involved in hormone signaling pathways, particularly auxin signaling pathways, were identified. Moreover, the levels of endogenous indole-3-acetic acid (IAA) were lower in Dwf mutant than in WT. The Aux/IAA transcription factor gene MbIAA19 was downregulated in Dwf mutant due to a single nucleotide sequence change in its promoter. Genetic transformation assay demonstrated strong association between MbIAA19 and the dwarf phenotype. RNAi-IAA19 lines clearly exhibited reduced plant height, internode length, and endogenous IAA levels. Our study revealed that MbIAA19 plays a role in the regulation of dwarfism and endogenous IAA levels in M. baccata. Full article

The living environment of plants is not static; as such, they will inevitably be threatened by various external factors for their growth and development. In order to ensure the healthy growth of plants, in addition to artificial interference, the most important and effective method is to rely on the role of transcription factors in the regulatory network of plant responses to abiotic stress. This study conducted bioinformatics analysis on the MbWRKY46 gene, which was obtained through gene cloning technology from Malus baccata (L.) Borkh, and found that the MbWRKY46 gene had a total length of 1068 bp and encodes 355 amino acids. The theoretical molecular weight (MW) of the MbWRKY46 protein was 39.76 kDa, the theoretical isoelectric point (pI) was 5.55, and the average hydrophilicity coefficient was −0.824. The subcellular localization results showed that it was located in the nucleus. After conducting stress resistance studies on it, it was found that the expression of MbWRKY46 was tissue specific, with the highest expression level in roots and old leaves. Low temperature and drought had a stronger induction effect on the expression of this gene. Under low temperature and drought treatment, the expression levels of several downstream genes related to low temperature and drought stress (AtKIN1, AtRD29A, AtCOR47A, AtDREB2A, AtERD10, AtRD29B) increased more significantly in transgenic Arabidopsis. This indicated that MbWRKY46 gene can be induced to upregulate expression in Arabidopsis under cold and water deficient environments. The results of this study have a certain reference value for the application of M. baccata MbWRKY46 in low-temperature and drought response, and provide a theoretical basis for further research on its function in the future. Full article

GABA (γ-aminobutyric acid) is found in plants and accumulates rapidly under stresses. However, the contributions of glutamic acid and a (Glu)-derived pathway and polyamines (PAs) catabolism pathway on GABA accumulation and the regulatory effects of exogenous putrescine (Put) on a GABA shunt under suboptimal low root-zone temperatures remain unknown. Our results showed that suboptimal low root-zone temperatures (treatment L) significantly increased GABA contents and GABA transaminase (GABA-T) activities. The contribution rate of the PAs catabolism pathway increased from 20.60% to 43.31%. Treatment L induced oxidative stress in Malus baccata Borkh. roots. Exogenous Put increased the contents of endogenous Put, spermine (Spm), and spermidine (Spd), promoted the transformation of PAs, increased the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), and decreased the contents of hydrogen peroxide (H₂O₂), superoxide anion (O₂∙⁻), and malondialdehyde (MDA). Meanwhile, contrasting results were observed after aminoguanidine (AG, an inhibitor of diamine oxidase) application. These findings revealed that the Glu-derived pathway is the main route of GABA synthesis. The contribution rate of the Pas catabolism pathway increased gradually with the extension of treatment time, and the treatment of exogenous Put significantly improved the tolerance of Malus baccata Borkh. Roots to suboptimal low temperature by regulating the transformation of Pas, GABA shunt, and the antioxidant system. Full article

By measuring the changes in phytohormones and related enzyme activities of Malus ‘Huabiao’ scions and different rootstocks during the healing process of grafting, this study aims to analyze the effects of different rootstocks on the physiological metabolism of the grafting healing site, thereby providing reference for the selection of M. ‘Huabiao’ grafting rootstocks. The live seedlings of 1-0 M. hupehensis, M. robusta and M. baccata were chosen as rootstocks, and M. ‘Huabiao’ scions were grafted with these seedlings in spring by pasting method. The dynamic changes in activities of indole acetic acid, zeatin riboside, methyl jasmonate content and peroxidase, polyphenol oxidase and L-phenylalanine ammonia-lyase at the healing site of grafting were measured, and the effects of different grafting combinations on the phytohormone and related enzyme activities at the grafted site were investigated. It was found that the M. ‘Huabiao’/M. hupehensis and M. ‘Huabiao’/M. robusta grafting combinations had significantly higher survival rate than M. ‘Huabiao’/M. baccata which only had a success rate of 63%. At the beginning of graft healing, the contents of three phytohormones in healing sites of all the three grafting combinations exhibited a significant decrease. However, in the mid and late stages, great differences were shown in phytohormone content. During the grafting healing process, the changes in three enzyme activities in healing sites of the three grafting combinations showed some regularities. In conclusion, M. hupehensis and M. robusta have strong grafting compatibility with M. ‘Huabiao’; thus, they are suitable to be selected as rootstocks for grafting and propagation of M. ‘Huabiao’. In addition, the changes in phytohormone content and enzyme activity in different grafting combinations reflect the strong affinity relationship between rootstock and scion grafting. Full article

Malus baccata (L.) Borkh. is an important wild species of Malus. Its rich variation types and population history are not well understood. Chloroplast genome mining plays an active role in germplasm identification and genetic evolution. In this study, by assembly and annotation, six complete cp genome sequences, ranging in size from 160,083 to 160,295 bp, were obtained. The GC content of stable IR regions (42.7%) was significantly higher than that of full length (36.5%) and SC regions (LSC-34.2%, SSC-30.4%). Compared with other Malus species, it was found that there were more sites of polymorphisms and hotspots of variation in LSC and SSC regions, with high variation sites including trnR/UCU-atpA, trnT/UGU-trnL/UAA, ndhF-rpl32 and ccsA-ndhD. The intraspecific and interspecific collinearity was good, and no structural rearrangement was observed. A large number of repeating elements and different boundary expansions may be involved in shaping the cp genome size. Up to 77 or 78 coding genes were annotated in the cp genomes of M. baccata, and high frequency codons such as UUA (Leu), GCU (Ala) and AGA (Arg) were identified by relative synonymous codon usage analysis. Phylogeographic analysis showed that 12 individuals of M. baccata clustered into three different groups with complex structure, whereas variant xiaojinensis (M.H. Cheng & N.G. Jiang) was not closely related to M. baccata evolutionarily. The phylogenetic analysis suggested that two main clades of different M. baccata in the genus Malus were formed and that I and II diverged about 9.7 MYA. In conclusion, through cp genome assembly and comparison, the interspecific relationships and molecular variations of M. baccata were further elucidated, and the results of this study provide valuable information for the phylogenetic evolution and germplasm conservation of M. baccata and Malus. Full article

As an excellent grafting material, Malus baccata (L.) Borkh is native to Liaoning, Jilin, Heilongjiang and other regions in China, with a strong adverse environmental adaptability. As a typical transcription factor, the NAC gene acts as a regulator in many molecular pathways responding to abiotic stress. However, research of NAC in the Malus baccata has just begun. In the present research, a new NAC transcription factor, MbNAC22, was obtained from the seedlings of Malus baccata, and its function in drought and salt treatments was studied by heterologous expression. The open reading frame of the MbNAC22 gene is 768, encoding 255 amino acids (aa). Through confocal microscopy, MbNAC22 was found to be located in the nucleus. The heterologous expression of MbNAC22 in Arabidopsis showed that it enhanced the viability of Arabidopsis under drought and salt treatments. Under stresses, the chlorophyll content of the plants decreased, but the decline of the overexpressed-MbNAC22 Arabidopsis was relatively low. Through phenotypic observation and determination of stress-related physiological indicators, it was found that compared with WT Arabidopsis, overexpressed-MbNAC22 Arabidopsis had a higher tolerance to stresses. Under stresses, the overexpression of MbNAC22 positively regulated ion-transport-related genes (AtNHX1 and AtSOS1), the key genes of the ABA pathway (AtNCED3 and AtDREB2A), the proline synthesis gene (AtP5CS2) and the drought-induced gene (AtERD11), while the expression of the leaf senescence-associated gene (AtSAG21) and programmed cell death related gene (AtAEP1) was inhibited. Therefore, we speculate that MbNAC22 responds positively to drought and salt stresses by regulating the expression of stress-related genes. Full article

Malus baccata Borkh., an apple rootstock, is found to be damaged by oxidation at sub-low root-zone temperature. In previous studies, we have found that exogenous sucrose could alleviate oxidative damage and increase the indole acetic acid (IAA) in roots under sub-low temperature (L). However, the role of IAA in sucrose-induced tolerance to L remains unclear. A pot experiment was conducted to evaluate the effects of exogenous sucrose and IAA synthesis/transport inhibitors (2,3,5-triiodobenzoic acid, TIBA; 4-biphenylboronic acid, BBo) on growth, IAA levels, sugars, and the antioxidant system of M. baccata under L. The results showed that the L treatment decreased IAA contents by 23.69% (48 h) and induced significant increases in root contents of malondialdehyde (MDA) and reactive oxygen (ROS), along with increasing catalase (CAT), ascorbate peroxidase (APX), and glucose-6-phosphate dehydrogenase (G6PDH) activities, while superoxide dismutase (SOD) and monodehydroascorbate reductase (MDHAR) activities first increased (24 h) and then decreased (48 h), and glutathione reductase (GR) and peroxidase (POD) activities significantly decreased. The L treatment also decreased ascorbate/oxidized ascorbate (AsA/DHA), glutathione/oxidized glutathione (GSH/GSSG), and coenzyme II/oxidized coenzyme II (NADPH/NADP⁺) ratios. Furthermore, the L treatment increased the contents of sucrose, fructose, glucose and sorbitol in the roots and suppressed plant growth. Sucrose pretreatment significantly increased IAA contents (12.42%, 24 h and 14.44%, 48 h) and decreased MDA and ROS contents, which improved the activities of antioxidant enzymes other than APX and increased the contents of AsA, GSH, and NADPH, and increased sucrose, fructose, and sorbitol contents and promoted plant growth. However, the sucrose + TIBA or BBo treatments decreased IAA contents and attenuated or almost abolished the positive effects of exogenous sucrose under sub-low temperature. Our findings indicate that IAA is involved in the sucrose-induced regulation of the antioxidant system in M. baccata roots under sub-low temperature and we provided theoretical references for further study on the adaptability of apple roots to low temperature. Full article

Malus baccata (L.) Borkh. is one of the most widely used rootstocks in the apple-producing region of Northern China. However, in the early growing season, apple roots are often subjected to suboptimal low root-zone temperatures. The regulatory effects of exogenous γ-aminobutyric acid (GABA) on both the γ-aminobutyric acid shunt (GABA shunt) and the respiratory activity of roots under suboptimal low root-zone temperatures remain unknown. To explore the physiological basis for GABA alleviation of low-temperature stress in M. baccata Borkh. roots, the following treatments were examined: suboptimal low root-zone temperature (potted parts of the seedlings were maintained at 5 ± 0.5 °C; L); suboptimal low root-zone temperature + GABA (LG); and suboptimal low root-zone temperature + vigabatrin (VGB; LV), which is a specific active inhibitor of γ-aminobutyric acid transaminase (GABA-T). Each treatment was matched with a control (18 °C/8 °C day/night; CK) for comparison. Our results showed that the L treatment reduced the root vitality, increased malondialdehyde (MDA) content, promoted the accumulation of GABA, activated the GABA shunt, and inhibited the total root respiration rate (V_Total) by decreasing the respiratory rates of Embden–Meyerhof pathway (V_EMP) and tricarboxylic acid cycle (V_TCAC). The LG treatment significantly increased the content of endogenous GABA, accelerated the metabolism of the GABA shunt, enhanced root respiratory activity by increasing V_Total, V_EMP, V_TCAC, and increased the cytochrome pathway respiratory rate (V_CP), thus alleviating the damage of low root-zone temperature stress. Meanwhile, contrasting results were observed in the LV treatment. These findings revealed that exogenous GABA improved the tolerance of apple rootstocks to suboptimal low temperatures in early spring by regulating the GABA shunt and root respiratory activity. Full article

Apples are a major horticultural crop worldwide. Grafting techniques are widely utilized in apple production to keep the varieties pure. Interstocks are frequently used in Northern China to achieve intensive apple dwarfing cultivation. High-throughput sequencing was used to investigate differentially expressed genes in the phloem tissues of two different xenograft systems, M (‘Gala’/‘Mac 9’/Malus baccata (L.) Borkh.) and B (‘Gala’/Malus baccata (L.) Borkh.). The results showed that dwarfing interstocks could significantly reduce the height and diameters of apple trees while have few effects on the growth of annual branches. The interstocks were found to regulate the expression of genes related to hormone metabolism and tree body control (GH3.9, PIN1, CKI1, ARP1, GA2ox1 and GA20ox1), these effects may attribute the dwarf characters for apple trees with interstocks. Besides, the interstocks reduce photosynthesis-related genes (MADH-ME4 and GAPC), promote carbon (C) metabolism gene expression (AATP1, GDH and PFK3), promote the expression of nitrogen (N)-metabolism-related genes (NRT2.7, NADH and GDH) in rootstocks, and improve the expression of genes related to secondary metabolism in scions (DX5, FPS1, TPS21 and SRG1). We also concluded that the interstocks acquired early blooming traits due to promotion of the expression of flowering genes in the scion (MOF1, FTIP7, AGL12 and AGL24). This study is a valuable resource regarding the molecular mechanisms of dwarf interstocks’ influence on various biological processes and transplantation systems in both scions and rootstocks. Full article