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18 pages, 3651 KiB  
Article
Colombian Crop Resilience: Evaluating National Yield Stability for Fruit and Vegetable Systems
by Sebastian Parra-Londono, Jaime Andres Tigreros and Carlos Alberto Montoya-Correa
Agriculture 2024, 14(9), 1546; https://doi.org/10.3390/agriculture14091546 - 6 Sep 2024
Abstract
In recent years the yield of fruits and vegetables has been decreasing, threatening Colombia’s food security. Analysis of crop production data may lead to identifying cropping systems that have shown better adaptability to changes in climatic and non-climatic factors associated with agricultural production. [...] Read more.
In recent years the yield of fruits and vegetables has been decreasing, threatening Colombia’s food security. Analysis of crop production data may lead to identifying cropping systems that have shown better adaptability to changes in climatic and non-climatic factors associated with agricultural production. The open database AGRONET keeps data on the agricultural activities conducted in Colombia, allowing us to find the information organized by crops, regions and years. Aiming to identify resilient crop systems in Colombia, agricultural data on fruits and vegetables were analyzed. First, trends in crop production were studied by year and location, detecting the regions and crops with the highest yields in the period from 2006 until 2020. Then, mixed linear regression and principal components analysis were applied to elucidate the relation between non-climatic factors and crop yield. In Colombia, vegetable production was more efficient than fruits, observing yields of 10.23 and 13.33 t ha−1, respectively. On the other hand, the Colombian central region showed high yields for vegetables, while for fruits this was exhibited in northern and eastern locations. In the present study, yield variation responded to changes in the location of crop systems, while years had no effect on vegetable production. Furthermore, the price of the agricultural product and the cost of fertilizers were associated with the yield of the analyzed crop systems. In Colombia, carrots, cabbage, tomato papaya and pineapple are resilient crops whose yield increases, especially in the regions where they are cultivated. Full article
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14 pages, 836 KiB  
Article
Chemical and Sensory Properties of Corn Extrudates Enriched with Tomato Powder and Ascorbic Acid
by Valentina Obradović, Jurislav Babić, Antun Jozinović, Đurđica Ačkar and Drago Šubarić
Appl. Sci. 2024, 14(17), 7968; https://doi.org/10.3390/app14177968 - 6 Sep 2024
Abstract
The chemical and sensory properties of corn extrudates enriched with spray-dried tomato powder (TP) in 4, 6 and 8% ratios were researched. Two extrusion temperature regimes were used: 135/170/170 °C (E1) and 100/150/150 °C (E2). Ascorbic acid (AA) at levels of 0.5 and [...] Read more.
The chemical and sensory properties of corn extrudates enriched with spray-dried tomato powder (TP) in 4, 6 and 8% ratios were researched. Two extrusion temperature regimes were used: 135/170/170 °C (E1) and 100/150/150 °C (E2). Ascorbic acid (AA) at levels of 0.5 and 1% was also added to the raw mixtures in order to prevent the undesirable oxidation of the constituents, primarily carotenoids. AA was especially efficient in the case of the lutein content and 1% AA, but lutein originating from TP was more sensitive to the extrusion conditions than corn lutein, and zeaxanthin was more sensitive than lutein. Lycopene, α-carotene, 13-cis-β carotene and 9-cis-β carotene degraded completely in all the samples, at both extrusion regimes. The proposed models for the color of the extrudates showed the significant influence of TP and AA. Extrudates obtained at the E1 temperature regime containing 4% TP and pure corn extrudate with 1% AA were the best-rated samples by the sensory panel. Full article
(This article belongs to the Special Issue Enrichment of Foods with Phytonutrients)
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20 pages, 3238 KiB  
Article
Effects of Nutrient Accumulation and Microbial Community Changes on Tomato Fusarium Wilt Disease in Greenhouse Soil
by Lu Yang, Wei Han, Boyuan Tan, Yue Wu, Song Li and Yanli Yi
Sustainability 2024, 16(17), 7756; https://doi.org/10.3390/su16177756 - 6 Sep 2024
Viewed by 86
Abstract
Fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici has severely threatened sustainable greenhouse tomato production. However, the effects of nutrient enrichment due to excessive fertilization on Fusarium wilt remain unclear. This study aimed to investigate the relationships among soil nutrient enrichment, microbial [...] Read more.
Fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici has severely threatened sustainable greenhouse tomato production. However, the effects of nutrient enrichment due to excessive fertilization on Fusarium wilt remain unclear. This study aimed to investigate the relationships among soil nutrient enrichment, microbial community structure, and the occurrence of Fusarium wilt under greenhouse conditions. This study used chemical analysis and microbiological techniques to analyze rhizosphere soil samples from greenhouse tomato production areas with varying degrees of Fusarium wilt. The results showed that, as compared with the Health group, the rhizosphere soil of Disease group has a significant nutrient enrichment, which significantly influences bacterial diversity and structure. Particularly when soil NO3–N content exceeds 170.43 mg kg−1, there was a significant reduction in the relative abundance of key biocontrol bacteria such as Bacillus and Lysinibacillus. This reduction indirectly contributes to an increase in Fusarium oxysporum abundance, subsequently elevating the likelihood of pathogen infection. Furthermore, the Disease group also exhibited a simplified co-occurrence network with a 22.37% reduction in competitive interactions between bacteria and fungi. These changes might collectively increase the risk of tomato Fusarium wilt infection. Meanwhile, the relative abundance of bacteria carrying antibiotic resistance genes significantly increased in the Disease group, which also reduced soil resistance. Together, the results presented here not only uncover the effect of long-term excessive fertilization on the occurrence of Fusarium wilt but also advance our understanding of the interactions among soil nutrient management and microbial communities in the tomato rhizosphere, which provides a scientific basis for formulating strategies to prevent soil-borne diseases in greenhouse tomatoes. Full article
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12 pages, 757 KiB  
Article
Erosive Tooth Wear and Associated Risk Indicators in Schoolchildren from Rural and Urban Areas of the State of Mexico: A Cross-Sectional Study
by José Cuauhtémoc Jiménez-Núñez, Álvaro Edgar González-Aragón Pineda, Teresa Villanueva-Gutiérrez, Rodrigo Leopoldo Longinos-Huerta, Luis Pablo Cruz-Hervert, Adrian Lussi and Socorro Aída Borges-Yáñez
Children 2024, 11(9), 1090; https://doi.org/10.3390/children11091090 - 6 Sep 2024
Viewed by 174
Abstract
Background and Objective: Limited access to health services and low educational levels are factors in the rural population that are associated with the development of oral pathologies. However, the specific risk indicators contributing to erosive tooth wear (ETW) in these populations remain unclear. [...] Read more.
Background and Objective: Limited access to health services and low educational levels are factors in the rural population that are associated with the development of oral pathologies. However, the specific risk indicators contributing to erosive tooth wear (ETW) in these populations remain unclear. The objective of this study was to identify risk indicators associated with the prevalence of erosive tooth wear (ETW) in schoolchildren aged 8–12 years from rural and urban areas in the State of Mexico. Methods: A cross-sectional study was carried out in public schools in rural and urban areas. The prevalence of ETW was evaluated using the Basic Erosive Wear Examination (BEWE). The risk indicators studied were gastroesophageal reflux, vomiting, vitamin C, food, beverages, dental hygiene, bruxism, and hyposalivation. Logistic regression models were used to calculate odds ratios (OR) and 95% confidence intervals (CI). Results: The prevalence of ETW was higher in the rural area (77.3%) compared to the urban area (51.2%) (p = 0.001). The odds of presenting ETW were more than twice in schoolchildren from rural areas compared to those from urban areas (OR: 2.25, 95% CI: 1.11–3.98). Risk indicators varied between rural and urban populations, with different factors such as the consumption of fresh tomato sauce, orange, tangerine, atole (artisanal corn-based drink), and teeth grinding in the rural area, and lemon, soft drink, fruit juice consumption, and the simplified oral hygiene index in the urban area (p < 0.05). Conclusions: To prevent ETW, strategies offering tailored dietary and hygiene advice should be proposed, considering the specific conditions of each geographic area. Full article
(This article belongs to the Section Pediatric Dentistry & Oral Medicine)
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14 pages, 6113 KiB  
Article
Enhancement of Tomato Seed Germination and Growth Parameters through Seed Priming with Auxin-Producing Plant Growth Promoting Bacteria Strains
by Livia Pappalettere, Susanna Bartolini and Annita Toffanin
Seeds 2024, 3(3), 479-492; https://doi.org/10.3390/seeds3030032 - 5 Sep 2024
Viewed by 166
Abstract
The use of microbial seed priming may be a promising tool to improve the first stages of seed germination of several herbaceous species. In tomatoes (Solanum lycopersicum L.), enhanced germination and vigor, and biotic and abiotic stress control, with a reduction in [...] Read more.
The use of microbial seed priming may be a promising tool to improve the first stages of seed germination of several herbaceous species. In tomatoes (Solanum lycopersicum L.), enhanced germination and vigor, and biotic and abiotic stress control, with a reduction in chemicals, have been reported. In this study, seeds from two Italian tomato varieties (Canestrino di Lucca and Pisanello) were primed with seven different strains of plant growth-promoting rhizobacteria (PGPB) belonging to Azospirillum baldaniorum, A. brasilense, Methylobacterium symbioticum, Bacillus amyloliquefaciens, B. licheniformis, and B. subtilis. They were selected for their ability to produce auxin. The germination test was carried out on treated seeds and the germination percentage was calculated. The obtained seedlings were transplanted and kept in greenhouse conditions. After 60 d, fresh and dry weight, root number, and length of plantlets were recorded. A general and significant improvement in the growth parameters was observed in the treated plants. All microbial strains proved to be indolacetic acid (IAA) producers using the Salkowsky method. A positive relationship between root number and length, and amount of IAA was found. The overall results suggest that the microbial priming of tomato seed could be useful for advancing organic farming, sustainable agriculture, and environmental protection. Full article
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15 pages, 3964 KiB  
Article
Regulation of Anthocyanin Accumulation in Tomato Solanum lycopersicum L. by Exogenous Synthetic dsRNA Targeting Different Regions of SlTRY Gene
by Andrey R. Suprun, Artem Yu. Manyakhin, Evgeniya V. Trubetskaya, Konstantin V. Kiselev and Alexandra S. Dubrovina
Plants 2024, 13(17), 2489; https://doi.org/10.3390/plants13172489 - 5 Sep 2024
Viewed by 190
Abstract
RNA interference (RNAi) is a regulatory and protective mechanism that plays a crucial role in the growth, development, and control of plant responses to pathogens and abiotic stresses. In spray-induced gene silencing (SIGS), exogenous double-stranded RNAs (dsRNA) are used to efficiently regulate target [...] Read more.
RNA interference (RNAi) is a regulatory and protective mechanism that plays a crucial role in the growth, development, and control of plant responses to pathogens and abiotic stresses. In spray-induced gene silencing (SIGS), exogenous double-stranded RNAs (dsRNA) are used to efficiently regulate target genes via plant surface treatment. In this study, we aimed to evaluate the effect of specific exogenous dsRNAs on silencing different regions (promoter, protein-coding and intron) of the target SlTRY tomato gene, encoding an R3-type MYB repressor of anthocyanin biosynthesis. We also assessed the impact of targeting different SlTRY regions on the expression of genes involved in anthocyanin and flavonoid biosynthesis. This study demonstrated the critical importance of selecting the appropriate gene target region for dsRNA action. The highest inhibition of the SlTRY gene expression and activation of anthocyanin biosynthesis was achieved by dsRNA complementary to the protein-coding region of SlTRY gene, compared with dsRNAs targeting the SlTRY promoter or intron regions. Silencing the SlTRY gene increased the content of anthocyanins and boosted levels of other substances in the phenylpropanoid pathway, such as caffeoyl putrescine, chlorogenic acid, ferulic acid glucoside, feruloyl quinic acid, and rutin. This study is the first to examine the effects of four different dsRNAs targeting various regions of the SlTRY gene, an important negative regulator of anthocyanin biosynthesis. Full article
(This article belongs to the Special Issue Research on Plant Genomics and Breeding 2023)
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14 pages, 823 KiB  
Article
Investigating the Effect of High-Voltage Electrostatic Field (HVEF) Treatment on the Physicochemical Characteristics, Bioactive Substances Content, and Shelf Life of Tomatoes
by Xiaobao Nie, Zhijie Zuo, Li Zhou, Zhe Gao, Lilin Cheng, Xiaoli Wang, Linghong Nie and Ping-Hsiu Huang
Foods 2024, 13(17), 2823; https://doi.org/10.3390/foods13172823 - 5 Sep 2024
Viewed by 181
Abstract
This study evaluated the ability of a high-voltage electrostatic field (HVEF) treatment to extend the shelf life of tomatoes. Tomatoes were exposed to HVEF treatment for different lengths of time, and the physicochemical properties of tomatoes and bioactive compounds were monitored during 28 [...] Read more.
This study evaluated the ability of a high-voltage electrostatic field (HVEF) treatment to extend the shelf life of tomatoes. Tomatoes were exposed to HVEF treatment for different lengths of time, and the physicochemical properties of tomatoes and bioactive compounds were monitored during 28 days of storage at 4 °C. The results indicated that the quality parameters of tomatoes were better maintained during storage by the HVEF treatment relative to the control treatment, extending their shelf life by 14–28 days. The HVEF treatment mitigated losses in firmness, weight, color changes, and bioactive substances, such as total phenolic content, total flavonoid content, ascorbic acid, and lycopene. The activity of pectin-degrading enzymes was also inhibited. The best exposure times for the HVEF treatment were 90 and 120 min. While the measured parameters decreased in both the control and HVEF treatment groups, the decrease in all of these measured parameters was significantly less (p < 0.05) in the optimum HVEF treatment groups than in the control. While the physicochemical properties may vary between different tomato varieties, the HVEF treatment of harvested tomatoes for 90 or 120 min can mitigate the degradation of quality parameters and loss of bioactive compounds incurred during the postharvest storage of tomatoes, thus maintaining their commercial value. Full article
(This article belongs to the Special Issue Emerging Techniques for the Processing and Preservation of Foods)
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14 pages, 1343 KiB  
Article
Demonstration of Insect Vector-Mediated Transfer of a Betasatellite between Two Helper Viruses
by Noun Fouad, Martine Granier, Stéphane Blanc, Gaël Thébaud and Cica Urbino
Viruses 2024, 16(9), 1420; https://doi.org/10.3390/v16091420 - 5 Sep 2024
Viewed by 168
Abstract
Begomoviruses, transmitted by the whitefly Bemisia tabaci, pose significant threats to global agriculture due to their severe impact on various crops. Among the satellite molecules associated with begomoviruses, betasatellites play a crucial role in enhancing disease severity and yield losses. The spread [...] Read more.
Begomoviruses, transmitted by the whitefly Bemisia tabaci, pose significant threats to global agriculture due to their severe impact on various crops. Among the satellite molecules associated with begomoviruses, betasatellites play a crucial role in enhancing disease severity and yield losses. The spread and association of these molecules with helper viruses in host plants are thus matters of concern. Here, we focus on the propagation of betasatellites and, more specifically, on their transfer between different helper viruses and hosts through vector transmission. Our results show that the cotton leaf curl Gezira betasatellite (CLCuGeB), initially acquired with its helper virus cotton leaf curl Gezira virus (CLCuGeV) from an okra plant, can be transmitted and assisted by a different helper virus, tomato yellow leaf curl virus (TYLCV), in a different host plant (tomato plant). The new association can be formed whether TYLCV and CLCuGeB encounter each other in a host plant previously infected with TYLCV or in whiteflies having acquired the different components separately. Our findings reveal two pathways by which betasatellites can be transferred between helper viruses and host plants and highlight the ability of betasatellites to spread in begomovirus-infected environments. Full article
(This article belongs to the Special Issue Plant Viruses and Their Vectors: Epidemiology and Control)
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15 pages, 1389 KiB  
Article
Impact of Harvesting Stages and Postharvest Treatments on the Quality and Storability of Tomato Fruits (Solanum lycopersicum L.) cv. Sangaw
by Bzhwean Anwar Mouhamed and Sidiq Aziz Sidiq Kasnazany
Coatings 2024, 14(9), 1143; https://doi.org/10.3390/coatings14091143 - 5 Sep 2024
Viewed by 164
Abstract
The objective of this study was to evaluate the impact of harvesting stages (turning-color fruit and light red color) and postharvest treatments (distilled water, hot water at 35 °C, 10% Aloe vera, 2% CaCl2, 5% Mint, and 5% Catnip) for [...] Read more.
The objective of this study was to evaluate the impact of harvesting stages (turning-color fruit and light red color) and postharvest treatments (distilled water, hot water at 35 °C, 10% Aloe vera, 2% CaCl2, 5% Mint, and 5% Catnip) for 5 min on the quality and storability of tomato fruits cv. Sangaw stored at 10 ± 1 °C and a relative humidity of 90%–95% for 20 days. Fruit harvested at the turning-color fruit stage presented significantly lower weight loss, greater firmness, and higher amounts of vitamin C, total phenol, and calcium (3.22%, 1118.31 g mm/s, 15.83 mg 100 g−1, 95.49 mg 100 mL−1 FW, and 0.14%, respectively). However, the tomatoes harvested from the light red color fruit stage presented the highest contents of total soluble sugars, total sugars, and lycopene (4.36%, 3.99%, and 41.49 mg kg−1, respectively). Notably, the postharvest treatment of tomato fruits with 2% CaCl2 significantly decreased weight loss and resulted in greater firmness, pH, total sugar, total phenol, and calcium contents (3.90%, 1212.39 g mm/s, 4.83, 3.85%, 95.60 mg 100 mL−1 FW, and 0.18%, respectively) than the control. Hence, coating with 10% Aloe vera resulted in the highest amount of total soluble solids and the highest amount of vitamin C. Tomato picked at the turning-color fruit stage and immersed in 5% Mint significantly lowered the loss of fruit weight, increased the total titratable acidity, and had the lowest content of lycopene. Additionally, the fruits harvested at the same stage and immersed in 2% CaCl2 retained greater firmness, total phenol content, and calcium content. On the other hand, fruits harvested in the light red stage and dipped in 5% Mint presented the highest total soluble sugars and total sugar contents. Finally, the harvested tomato fruits coated with 10% Aloe vera retained a relatively high level of vitamin C, indicating the storage life and quality of the tomato fruits. Full article
(This article belongs to the Special Issue Advanced Coatings and Films for Food Packing and Storage, 2nd Edition)
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19 pages, 2242 KiB  
Article
Presence of Heavy Metals in Irrigation Water, Soils, Fruits, and Vegetables: Health Risk Assessment in Peri-Urban Boumerdes City, Algeria
by Mohamed Younes Aksouh, Naima Boudieb, Nadjib Benosmane, Yacine Moussaoui, Rajmund Michalski, Justyna Klyta and Joanna Kończyk
Molecules 2024, 29(17), 4187; https://doi.org/10.3390/molecules29174187 - 4 Sep 2024
Viewed by 266
Abstract
This study investigates heavy metal contamination in soils, irrigation water, and agricultural produce (fruits: Vitis vinifera (grape), Cucumis melo var. saccharimus (melon), and Citrullus vulgaris. Schrade (watermelon); vegetables: Lycopersicum esculentum L. (tomato), Cucurbita pepo (zucchini), Daucus carota (carrot), Lactuca sativa (lettuce), Convolvulus Batatas (potato), [...] Read more.
This study investigates heavy metal contamination in soils, irrigation water, and agricultural produce (fruits: Vitis vinifera (grape), Cucumis melo var. saccharimus (melon), and Citrullus vulgaris. Schrade (watermelon); vegetables: Lycopersicum esculentum L. (tomato), Cucurbita pepo (zucchini), Daucus carota (carrot), Lactuca sativa (lettuce), Convolvulus Batatas (potato), and Capsicum annuum L. (green pepper)) in the Boumerdes region of Algeria. The concentrations of seven heavy metals (cadmium (Cd), chromium (Cr), copper (Cu), iron (Fe), nickel (Ni), lead (Pb), and zinc (Zn)) in soil and food samples were analyzed using atomic absorption spectrometry. Health risks associated with these metals were evaluated through the estimated daily intake (EDI), non-carcinogenic risks (using target hazard quotient (THQ), total target hazard quotient (TTHQ), and hazard index (HI)), and carcinogenic risks (cancer risk factor (CR)). Statistical analyses, including cluster analysis (CA) and Pearson correlation, were conducted to interpret the data. The results revealed the highest metal transfer as follows: Cd was most significantly transferred to tomatoes and watermelons; Cr to carrots; Cu to tomatoes; and Fe, Ni, Pb, and Zn to lettuce. Among fruits, the highest EDI values were for Zn (2.54·10−3 mg/day) and Cu (1.17·10−3 mg/day), with melons showing the highest Zn levels. For vegetables, the highest EDI values were for Fe (1.68·10−2 mg/day) and Zn (8.37·10−3 mg/day), with potatoes showing the highest Fe levels. Although all heavy metal concentrations were within the World Health Organization’s permissible limits, the HI and TTHQ values indicated potential health risks, particularly from vegetable consumption. These findings suggest the need for ongoing monitoring to ensure food safety and mitigate health risks associated with heavy metal contamination. Full article
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15 pages, 5201 KiB  
Article
Valorisation of Tomato Waste as a Source of Cutin for Hydrophobic Surface Coatings to Protect Starch- and Gelatine-Blend Bioplastics
by Marta Mroczkowska, David Culliton, Kieran J. Germaine, Manasa Hegde, Edmond F. Tobin and Adriana Cunha Neves
Biomass 2024, 4(3), 990-1004; https://doi.org/10.3390/biomass4030055 - 2 Sep 2024
Viewed by 238
Abstract
The valorisation of food by-products is an important step towards sustainability in food production. Tomatoes constitute one of the most processed crops in the world (160 million tonnes of tomatoes are processed every year), of which 4% is waste. This translates to 6.4 [...] Read more.
The valorisation of food by-products is an important step towards sustainability in food production. Tomatoes constitute one of the most processed crops in the world (160 million tonnes of tomatoes are processed every year), of which 4% is waste. This translates to 6.4 million tonnes of tomato skins and seeds. Currently, this waste is composted or is used in the production of low-value animal feed; higher value can be achieved if this waste stream is re-appropriated for more advanced purposes. Plant cuticle is a membrane structure found on leaves and fruit, including tomatoes, and is mainly composed of cutin. The main function of plant cuticle is to limit water loss from the internal tissue of the plant. Cutin, which can be recovered from the tomato skins by pH shift extraction, has hydrophobic (water repellent) properties and is therefore an ideal raw material for the development of a novel water-resistant coating. In this study, biomass-based bioplastics were developed. Unfortunately, although these bioplastics have good mechanical properties, their hydrophilic nature results in poor water barrier properties. To mitigate this, a very effective water-resistant coating was formulated using the cutin extracted from tomato peels. The water vapour permeability rates of the bioplastics improved by 74% and the percentage swelling of the bioplastic improved by 84% when treated with the cutin coating. With physicochemical properties that can compete with petroleum-based plastics, these bioplastics have the potential to address the growing market demand for sustainable alternatives for food packaging. Using ingredients generated from by-products of the food processing industries (circular economy), the development of these bioplastics also addresses the UN’s Sustainable Development Goal (SDG) 12, Sustainable Consumption and Production (SCP). Full article
(This article belongs to the Special Issue Biomass Materials: Synthesis, Functionalisation, and Applications)
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14 pages, 1837 KiB  
Article
Prediction of Total Soluble Solids Content Using Tomato Characteristics: Comparison Artificial Neural Network vs. Multiple Linear Regression
by Aylin Kabaş, Uğur Ercan, Onder Kabas and Georgiana Moiceanu
Appl. Sci. 2024, 14(17), 7741; https://doi.org/10.3390/app14177741 - 2 Sep 2024
Viewed by 300
Abstract
Tomatoes are among the world’s most significant vegetables, both in terms of production and consumption. Harvesting takes place in tomato production when the important quality attribute of total soluble solids content reaches its maximum possible level. Tomato total soluble solids content (TSS) is [...] Read more.
Tomatoes are among the world’s most significant vegetables, both in terms of production and consumption. Harvesting takes place in tomato production when the important quality attribute of total soluble solids content reaches its maximum possible level. Tomato total soluble solids content (TSS) is among the most crucial attribute parameters for assessing tomato quality and for tomato commercialization. Determination of total soluble solids content by conventional measurement methods is both destructive and time-consuming. Therefore, the tomato processing industry needs a rapid identification method to measure total soluble solids content (TSS). In this study, we aimed to estimate how much soluble solids there are in beef tomato fruit by Artificial Neural Networks (ANN) and Multiple Linear Regression (MLR) methods. The models were assessed using the Coefficient of Determination (R2), Mean Absolute Error (MAE), Root Mean Square Error (RMSE), and Mean Absolute Percentage Error (MAPE) metrics. The training data set results of the MLR model established to estimate the amount of brix in tomato fruit, calculated as MAE: 0.2349, RMSE: 0.3048, R2: 0.8441, and MAPE: 5.5368, while, according to the ANN model, MAE: 0.0250, RMSE: 0.031, R2: 0.9982 and MAPE: 0.5814. According to the metric outcomes, the ANN-based model performed better in both the training and testing parts. Full article
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14 pages, 4669 KiB  
Article
Genome-Wide Identification of GH17s Family Genes and Biological Function Analysis of SlA6 in Tomato
by Da Chen, Zaohai Zeng, Canye Yu, Huimin Hu, Yuxiang Lin, Caiyu Wu, Yinghua Yang, Qiuxiang Zhong, Xinyue Zhang, Caihong Huang, Yiwen Yao, Zhengkun Qiu, Xiaomin Wang, Rui Xia, Chongjian Ma, Riyuan Chen, Yanwei Hao and Hongling Guan
Plants 2024, 13(17), 2443; https://doi.org/10.3390/plants13172443 - 1 Sep 2024
Viewed by 399
Abstract
Glycoside hydrolases (GHs), enzymes that break down glycosidic bonds in carbohydrates and between carbohydrates and non-carbohydrates, are prevalent in plants, animals, microorganisms, and other organisms. The tomato is a significant crop that contains the GH17 gene family. However, its role in tomatoes has [...] Read more.
Glycoside hydrolases (GHs), enzymes that break down glycosidic bonds in carbohydrates and between carbohydrates and non-carbohydrates, are prevalent in plants, animals, microorganisms, and other organisms. The tomato is a significant crop that contains the GH17 gene family. However, its role in tomatoes has yet to be fully investigated. In this study, we identified 43 GH17 genes from the tomato genome, distributed unevenly across 12 chromosomes. We further analyzed their gene structure, phylogenetic relationships, promoter elements, and expression patterns. The promoter element analysis indicated their potential roles in response to biotic and abiotic stresses as well as phytohormone effects on growth and development. The expression studies across different tomato tissues revealed that 10 genes were specifically expressed in floral organs, with SlA6 prominently expressed early during bud formation. By using CRISPR/Cas9 gene-editing technology, SlA6 knockout plants were generated. Phenotypic characterization showed that pollen viability, pollen tube germination, fruit weight, and seed number were significantly reduced in the Sla6 mutant, but the soluble solids content (TSS) was significantly higher in the Sla6 mutant, suggesting that SlA6 affects pollen development and fruit quality. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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10 pages, 3633 KiB  
Communication
Resistance of the CRISPR-Cas13a Gene-Editing System to Potato Spindle Tuber Viroid Infection in Tomato and Nicotiana benthamiana
by Ying Wei Khoo, Qingsong Wang, Shangwu Liu, Binhui Zhan, Tengfei Xu, Wenxia Lv, Guangjing Liu, Shifang Li and Zhixiang Zhang
Viruses 2024, 16(9), 1401; https://doi.org/10.3390/v16091401 - 31 Aug 2024
Viewed by 519
Abstract
Gene-editing technology, specifically the CRISPR-Cas13a system, has shown promise in breeding plants resistant to RNA viruses. This system targets RNA and, theoretically, can also combat RNA-based viroids. To test this, the CRISPR-Cas13a system was introduced into tomato plants via transient expression and into [...] Read more.
Gene-editing technology, specifically the CRISPR-Cas13a system, has shown promise in breeding plants resistant to RNA viruses. This system targets RNA and, theoretically, can also combat RNA-based viroids. To test this, the CRISPR-Cas13a system was introduced into tomato plants via transient expression and into Nicotiana benthamiana through transgenic methods, using CRISPR RNAs (crRNAs) targeting the conserved regions of both sense and antisense genomes of potato spindle tuber viroid (PSTVd). In tomato plants, the expression of CRISPR-Cas13a and crRNAs substantially reduced PSTVd accumulation and alleviated disease symptoms. In transgenic N. benthamiana plants, the PSTVd levels were lower as compared to wild-type plants. Several effective crRNAs targeting the PSTVd genomic RNA were also identified. These results demonstrate that the CRISPR-Cas13a system can effectively target and combat viroid RNAs, despite their compact structures. Full article
(This article belongs to the Special Issue Crop Resistance to Viral Infections)
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16 pages, 5498 KiB  
Article
A Putative Effector Pst-18220, from Puccinia striiformis f. sp. tritici, Participates in Rust Pathogenicity and Plant Defense Suppression
by Mengfan Tian, Zhen Zhang, Xiaorui Bi, Yan Xue, Jiahui Zhou, Bo Yuan, Zhaozhong Feng, Lianwei Li and Junjuan Wang
Biomolecules 2024, 14(9), 1092; https://doi.org/10.3390/biom14091092 - 31 Aug 2024
Viewed by 360
Abstract
Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), stands out as one of the most devastating epidemics impacting wheat production worldwide. Resistant wheat varieties had swiftly been overcome due to the emergence of new virulent Pst strains. Effectors secreted [...] Read more.
Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), stands out as one of the most devastating epidemics impacting wheat production worldwide. Resistant wheat varieties had swiftly been overcome due to the emergence of new virulent Pst strains. Effectors secreted by Pst interfere with plant immunity, and verification of their biological function is extremely important for controlling wheat stripe rust. In this study, we identified an effector, Pst-18220, from Puccinia striiformis f. sp. tritici (Pst), which was induced during the early infection stage of Pst. Silencing the expression of Pst-18220 through virus-mediated host-induced gene silencing (HIGS) resulted in a decreased number of rust pustules. In Nicotiana benthamiana, it significantly suppressed cell death induced by Pseudomonas syringae pv. tomato (Pto) DC3000. In Arabidopsis, plants with stable overexpression of Pst-18220 showed increased susceptibility to Pto DC3000, accompanied by a decrease in the expression level of pattern-triggered immunity (PTI)/effector-triggered immunity (ETI)-related genes, namely, AtPCRK1, AtPCRK2, and AtBIK1. These results emphasize the significant role of the Pst candidate effector, Pst-18220, in rust pathogenicity and the suppression of plant defense mechanisms. This broadens our understanding of effectors without any known motif. Full article
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